M+K in simple adduct mode #34
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test Nextflow Workflow | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| # - name: Install dependencies | |
| # run: | | |
| # # Installing Nextflow | |
| # curl -s https://get.nextflow.io | bash | |
| # mv nextflow /usr/local/bin | |
| # # Installing Conda | |
| # wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh | |
| # chmod +x Miniconda3-latest-Linux-x86_64.sh | |
| # bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda | |
| # export PATH="$HOME/miniconda/bin:$PATH" | |
| # conda init bash | |
| # conda config --set always_yes yes --set changeps1 no | |
| # # Install mamba | |
| # conda install -c conda-forge mamba | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: nextflow | |
| environment-file: test/test_environment.yml | |
| auto-activate-base: true | |
| - name: Test Workflow | |
| shell: bash -el {0} | |
| run: | | |
| conda activate nextflow && make run |