Resting State Stats

This release is to be used for running the additional Resting State Stats pipeline. It contains all the changes up through version v3.6.0 Release Candidate d that were made for processing HCP 7T data and LifeSpan Prisma 3T Diffusion Data. However, the changes for HCP 7T data have not been fully tested.

v3.6.0 Release Candidate d

Release candidate d for processing HCP 7T data and LifeSpan Prisma 3T Diffusion Data.

Fixes a bug in split of Task fMRI Analysis pipeline into version 1.0 and version 2.0. Bug involved assuming that the v1.0 and v2.0 script files could be invoked from the dispatching script from within the current directory (the . directory).

v3.6.0 Release Candidate c

Release candidate b for processing HCP 7T data and LifeSpan Prisma 3T Diffusion Data. This version splits the Task fMRI Analysis pipeline into version 1.0 to be used with FSL version 5.0.6 and earlier and version 2.0 to be used with FSL version 5.0.7 and later.

Update 24 Apr 2015

There is a known bug in Task fMRI Analysis in this version. Please use v3.6.0-RCd (or later) instead.

v3.6.0 Release Candidate b

Release candidate b for processing HCP 7T data and LifeSpan Prisma 3T Diffusion Data

v3.6.0 Release Candidate a

Release candidate for processing HCP 7T data and LifeSpan Prisma 3T Diffusion Data

General Electric Field Maps - Untested

This pre-release integrates code supplied by Gaurav Patel of Columbia University to support the use of Gradient Echo Field Maps generated by General Electric scanners for readout distortion correction. These changes have not yet been tested.

Diffusion QC Additions

Added switches to enable production of outlier statistics and enable outlier replacement in diffusion preprocessing.

External Documentation Improvements

Moved Release Notes, Installation, and Usage information along with Frequently Asked Questions (FAQ) to the project wiki.

v3.4.0 - First Public Release

Please see the README file for this release at https://github.com/Washington-University/Pipelines/blob/v3.4.0/README.md

v3.3.3 - Separate Diffusion Tractography

This pre-release no longer contains pipeline scripts, example scripts, and binaries related to Diffusion Tractography. Those files are now part of the diffusion-tractography branch. Any ongoing development of Diffusion Tractography should go on in the diffusion-tractography branch.

If the Diffusion Tractography files become a supported part of the HCP Pipelines product, then the diffusion-tractography branch will need to be merged into the master branch. If it is anticipated that Diffusion Tractography will not become a supported part of the HCP Pipelines product, then the Diffusion Tractography files can be split off into a separate product (in a separate repository) that has the HCP Pipelines as a prerequisite.