Update main.yml #40
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| name: Deploy Shiny App | |
| on: | |
| push: | |
| branches: | |
| - master # Trigger deployment on push to master branch | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the code | |
| uses: actions/checkout@v3 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.4.1' # Specify the version of R | |
| - name: Install remotes to handle GitHub installations | |
| run: | | |
| Rscript -e 'install.packages("remotes", repos="https://cloud.r-project.org")' | |
| - name: Install required packages | |
| run: | | |
| Rscript -e 'install.packages(c("rms", "Matrix"), repos="https://cloud.r-project.org")' | |
| Rscript -e 'install.packages(c("haven", "shinythemes", "tidyverse", "shiny", "shinydashboard", "shinyWidgets", "lubridate", "stringr", "readxl", "plotly", "zoo", "gridExtra", "cowplot", "anytime", "data.table", "DT", "shinyjs", "flextable", "officer", "ggpubr", "EpiReport", "xlsx", "zscorer", "Hmisc", "survey", "questionr", "writexl", "openxlsx", "readr"), dep=TRUE)' | |
| - name: Install rsconnect from CRAN with logs | |
| run: | | |
| Rscript -e 'install.packages("rsconnect", repos="https://cloud.r-project.org", dependencies = TRUE)' | |
| Rscript -e 'print("rsconnect successfully installed.")' | |
| - name: Verify rsconnect is installed | |
| run: | | |
| Rscript -e 'if (!"rsconnect" %in% installed.packages()) stop("rsconnect not installed")' | |
| - name: Deploy to shinyapps.io | |
| env: | |
| SHINYAPPS_TOKEN: ${{ secrets.SHINYAPPS_TOKEN }} | |
| SHINYAPPS_SECRET: ${{ secrets.SHINYAPPS_SECRET }} | |
| run: | | |
| Rscript -e 'library(rsconnect)' # Ensure rsconnect is loaded | |
| Rscript -e 'rsconnect::setAccountInfo(name="worldhealthorg", token=Sys.getenv("SHINYAPPS_TOKEN"), secret=Sys.getenv("SHINYAPPS_SECRET"))' | |
| Rscript -e 'rsconnect::deployApp(appFiles=".", appName="GSHS", account="worldhealthorg", forceUpdate=TRUE)' |