This repository contains code and data for the paper A Random-Walk-Based Epidemiological Model by Andrew Chu, Greg Huber, Aaron McGeever, Boris Veytsman and David Yllanes

Directories and files

• Manifest.toml - used to set up Julia environment
• Project.toml - used to set up Julia environment
• data - data files. ".jld" files are compatible with Julia. Additional data is provided in this Google Drive folder due to Github file size limits.
• R0-prediction - code for generation of R0 prediction figure
• Figure 1c - code for generating figure 1c
• Figure 3 - code for generating figure 3
• Figure 4 - code for generating figure 4
• Figure 5 - code for generating figure 5. Uses data from "Figure_5_data.jld" in data folder
• Figure 6 - Uses data located in the Google Drive folder.
• Figure 7 - Uses data located in the Google Drive folder.
• Table 1 - code for generating table 1
• Figure S2 - code for generating figure S2. Uses data from files beginning with "rg_ar_" in data folder
• Figures S3 - S5 - code for generating figures S3 - S5. Uses data located in the Google Drive folder.
• Iso-R0 Estimation - code for generating data for iso-R0 lines in figure 4
• Phase Diagram - code for generating data for phase diagram in figure 4
• Radius of Gyration and Attack Rate Calculation - code for calculating radius of gyration and attack rate data in figure 6.
• Cluster Simulation - code for simulating outbreaks and calculating the radius of gyration, cluster mass, and cluster surface points in figures 6 and 7.
• utils.jl - helper functions for Cluster Simulation.