docs: rename arg to newer arg in documentation notebooks #389

a-r-j · Jul 24, 2024 · 430c4ad · 430c4ad
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diff --git a/notebooks/ppi_graph.ipynb b/notebooks/ppi_graph.ipynb
@@ -1990,11 +1990,11 @@
     "for n, d in g.nodes(data=True):\n",
     "    try:\n",
     "        fp = download_alphafold_structure(d['uniprot_ids'][0])[0]\n",
-    "        pg = construct_graph(pg_config, pdb_path=fp)\n",
-    "    \n",
+    "        pg = construct_graph(pg_config, path=fp)\n",
+    "\n",
     "        # Add protein graph as node feature\n",
     "        d['protein_graph'] = pg\n",
-    "    \n",
+    "\n",
     "        # Plot\n",
     "        ax = plot_protein_structure_graph(pg, label_node_ids=False, colour_nodes_by=\"residue_name\")\n",
     "        ax.set_title(d[\"uniprot_ids\"][0])\n",

diff --git a/notebooks/residue_graphs.ipynb b/notebooks/residue_graphs.ipynb
@@ -273,7 +273,7 @@
     "If you wish to use a local `.pdb` file, you can run:\n",
     "\n",
     "```python\n",
-    "g = construct_graph(config=config, pdb_path=\"../graphein/examples/pdbs/3eiy.pdb\")\n",
+    "g = construct_graph(config=config, path=\"../graphein/examples/pdbs/3eiy.pdb\")\n",
     "```"
    ]
   },