Add atlas and openmpi

.gitignore

@@ -0,0 +1,2 @@
+deploy/
+tmp/

atlas/gfortran-10.patch

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+Description: Fix FTBFS with gfortran 10
+Origin: other, https://github.com/Reference-LAPACK/lapack/commit/7fb63b1cd386b099d7da6eeaafc3e7dce055a7d0
+Bug-Debian: https://bugs.debian.org/957015
+Forwarded: no
+Reviewed-by: Sébastien Villemot <[email protected]>
+Last-Update: 2020-05-20
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- a/interfaces/blas/C/testing/c_dblat1.f
++++ b/interfaces/blas/C/testing/c_dblat1.f
+@@ -247,11 +247,11 @@
+             IF (ICASE.EQ.7) THEN
+ *              .. DNRM2TEST ..
+                STEMP(1) = DTRUE1(NP1)
+-               CALL STEST1(DNRM2TEST(N,SX,INCX),STEMP,STEMP,SFAC)
++               CALL STEST1(DNRM2TEST(N,SX,INCX),STEMP(1),STEMP,SFAC)
+             ELSE IF (ICASE.EQ.8) THEN
+ *              .. DASUMTEST ..
+                STEMP(1) = DTRUE3(NP1)
+-               CALL STEST1(DASUMTEST(N,SX,INCX),STEMP,STEMP,SFAC)
++               CALL STEST1(DASUMTEST(N,SX,INCX),STEMP(1),STEMP,SFAC)
+             ELSE IF (ICASE.EQ.9) THEN
+ *              .. DSCALTEST ..
+                CALL DSCALTEST(N,SA((INCX-1)*5+NP1),SX,INCX)
+--- a/interfaces/blas/C/testing/c_sblat1.f
++++ b/interfaces/blas/C/testing/c_sblat1.f
+@@ -247,11 +247,11 @@
+             IF (ICASE.EQ.7) THEN
+ *              .. SNRM2TEST ..
+                STEMP(1) = DTRUE1(NP1)
+-               CALL STEST1(SNRM2TEST(N,SX,INCX),STEMP,STEMP,SFAC)
++               CALL STEST1(SNRM2TEST(N,SX,INCX),STEMP(1),STEMP,SFAC)
+             ELSE IF (ICASE.EQ.8) THEN
+ *              .. SASUMTEST ..
+                STEMP(1) = DTRUE3(NP1)
+-               CALL STEST1(SASUMTEST(N,SX,INCX),STEMP,STEMP,SFAC)
++               CALL STEST1(SASUMTEST(N,SX,INCX),STEMP(1),STEMP,SFAC)
+             ELSE IF (ICASE.EQ.9) THEN
+ *              .. SSCALTEST ..
+                CALL SSCALTEST(N,SA((INCX-1)*5+NP1),SX,INCX)

compile-all.sh

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+#!/bin/sh
+
+export DEPLOY_DIR="$PWD/deploy/"
+
+#./compile-openmpi.sh
+./compile-atlas.sh
+

compile-atlas.sh

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+#!/bin/bash
+set -e
+set -v
+
+ATLAS_VERSION="3.10.3"
+ATLAS_SRC_TAR_NAME="atlas${ATLAS_VERSION}.tar.bz2"
+ATLAS_SRC_URL="http://downloads.sourceforge.net/math-atlas/${ATLAS_SRC_TAR_NAME}"
+
+if [[ -z "${DEPLOY_DIR}" ]]; then
+  echo "DEPLOY_DIR not set!" >&2
+  exit 1
+fi
+
+ATLAS_TMP_DIR="${PWD}/tmp/atlas"
+ATLAS_SRC_TAR="${ATLAS_TMP_DIR}/${ATLAS_SRC_TAR_NAME}"
+ATLAS_SRC_DIR="${ATLAS_TMP_DIR}/ATLAS"
+ATLAS_BUILD_DIR="${ATLAS_SRC_DIR}/build"
+ATLAS_DEPLOY_DIR="${DEPLOY_DIR}/atlas"
+
+rm -rf "${ATLAS_TMP_DIR}"
+mkdir -p "${ATLAS_TMP_DIR}"
+
+mkdir -p "${ATLAS_BUILD_DIR}"
+
+rm -rf "${ATLAS_DEPLOY_DIR}"
+mkdir -p "${ATLAS_DEPLOY_DIR}"
+
+curl -L "${ATLAS_SRC_URL}" -o "${ATLAS_SRC_TAR}"
+
+tar -xvf "${ATLAS_SRC_TAR}" -C "${ATLAS_TMP_DIR}"
+
+pushd "${ATLAS_SRC_DIR}"
+
+popd
+
+pushd "${ATLAS_BUILD_DIR}"
+
+"${ATLAS_SRC_DIR}/configure" \
+  --force-tids="1 0" \
+  --prefix="${ATLAS_DEPLOY_DIR}" \
+  -Fa acg '-march=native -O3 -fomit-frame-pointer -flto'
+
+make build
+
+#make
+
+popd

compile-openmpi.sh

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+#!/bin/bash
+set -e
+set -v
+
+OPENMPI_VERSION_MAJOR_MINOR="5.0"
+OPENMPI_VERSION_REVISION="0"
+OPENMPI_CFLAGS="-march=native -Ofast -fomit-frame-pointer -flto"
+OPENMPI_CXXFLAGS="${OPENMPI_CFLAGS}"
+OPENMPI_FCFLAGS="${OPENMPI_CFLAGS}"
+OPENMPI_LDFLAGS="-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now"
+
+if [[ -z "${DEPLOY_DIR}" ]]; then
+  echo "DEPLOY_DIR not set!" >&2
+  exit 1
+fi
+
+OPENMPI_VERSION="${OPENMPI_VERSION_MAJOR_MINOR}.${OPENMPI_VERSION_REVISION}"
+OPENMPI_TMP_DIR="${PWD}/tmp/openmpi"
+OPENMPI_SRC_TAR="${OPENMPI_TMP_DIR}/openmpi-${OPENMPI_VERSION}.tar.bz2"
+OPENMPI_SRC_DIR="${OPENMPI_TMP_DIR}/openmpi-${OPENMPI_VERSION}"
+
+OPENMPI_DEPLOY_DIR="${DEPLOY_DIR}/openmpi"
+
+rm -rf "${OPENMPI_TMP_DIR}"
+mkdir -p "${OPENMPI_TMP_DIR}"
+
+rm -rf "${OPENMPI_DEPLOY_DIR}"
+mkdir -p "${OPENMPI_DEPLOY_DIR}"
+
+curl "https://download.open-mpi.org/release/open-mpi/v${OPENMPI_VERSION_MAJOR_MINOR}/openmpi-${OPENMPI_VERSION}.tar.bz2" -o "${OPENMPI_SRC_TAR}"
+
+tar -xvf "${OPENMPI_SRC_TAR}" -C "${OPENMPI_TMP_DIR}"
+
+pushd "${OPENMPI_SRC_DIR}"
+
+
+# TODO: Add UCX
+# TODO: Research more options (WE NEED MAXIMUM PERFORMANCE!!!11!!!1!1!)
+# TODO: Compile with our compilers
+./configure \
+  --prefix="${OPENMPI_DEPLOY_DIR}" \
+  --disable-shared \
+  --enable-static \
+  --enable-mpirun-prefix-by-default \
+  --with-mpi-param-check=never \
+  "CFLAGS=${OPENMPI_CFLAGS}" \
+  "CXXFLAGS=${OPENMPI_CXXFLAGS}" \
+  "FCFLAGS=${OPENMPI_FCFLAGS}" \
+  "LDFLAGS=${OPENMPI_LDFLAGS}"
+
+make -j
+make install
+
+
+popd