Docs: info about --prefix replaced with info about ./install.sh

README.md

@@ -25,8 +25,7 @@ Full installation (about 800 MB, includes (1) tools for SV detection based on re
 The default installation location is `/usr/local/bin/` for the executable scripts, and `/usr/local/lib/` for 
 the python modules and auxiliary files. If you are getting a permission error during the installation, consider running setup.py with
 `sudo`, or create a virtual python environment and [install into it](http://docs.python-guide.org/en/latest/dev/virtualenvs/). 
-Alternatively, you may use the `--prefix` option for setup.py to provide a specific installation location 
-(follow the on-screen instructions about creating intermediate directories and modifying PYTHONPATH variable).
+Alternatively, you may use old-style installation scripts (`./install.sh` or ./install_full.sh`), which build QUAST package inplace.
 
 #### Usage
 

manual.html

@@ -189,7 +189,7 @@ <h2>1. Installation</h2>
     ./setup.py install_full
 </pre>
 </p>
-The default installation location is <code>/usr/local/bin/</code> for the executable scripts, and <code>/usr/local/lib/</code> for the python modules and auxiliary files. If you are getting a permission error during the installation, consider creating a virtual python environment and <a href="http://docs.python-guide.org/en/latest/dev/virtualenvs/">install into it</a>. Alternatively, you may use the <code>--prefix</code> option for <code>setup.py</code> to provide a specific installation location (follow the on-screen instructions about creating intermediate directories and modifying <code>PYTHONPATH</code> variable).
+The default installation location is <code>/usr/local/bin/</code> for the executable scripts, and <code>/usr/local/lib/</code> for the python modules and auxiliary files. If you are getting a permission error during the installation, consider creating a virtual python environment and <a href="http://docs.python-guide.org/en/latest/dev/virtualenvs/">install into it</a>. Alternatively, you may use old-style installation scripts (<code>./install.sh</code> or <code>./install_full.sh</code>), which build QUAST package inplace.
 </p>
 
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