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Update CI runner config.
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Update CI runner config:

    maturin generate-ci github --zig --pytest --platform manylinux macos > .github/workflows/CI.yml

and add "gcc" to "apt-get install" so "pybigwig" can be installed from source.
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ghuls committed Jul 8, 2024
1 parent e464080 commit cbde54b
Showing 1 changed file with 70 additions and 30 deletions.
100 changes: 70 additions & 30 deletions .github/workflows/CI.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# This file is autogenerated by maturin v1.4.0
# This file is autogenerated by maturin v1.7.0
# To update, run
#
# maturin generate-ci github
# maturin generate-ci github --zig --pytest --platform manylinux macos
#
name: CI

Expand All @@ -20,79 +20,119 @@ permissions:

jobs:
linux:
runs-on: ubuntu-latest
runs-on: ${{ matrix.platform.runner }}
strategy:
matrix:
target: [x86_64, aarch64, ppc64le]
platform:
- runner: ubuntu-latest
target: x86_64
- runner: ubuntu-latest
target: aarch64
- runner: ubuntu-latest
target: armv7
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
python-version: 3.x
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist --zig --find-interpreter
target: ${{ matrix.platform.target }}
args: --release --out dist --zig
sccache: 'true'
manylinux: auto
- name: Upload wheels
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: wheels
name: wheels-linux-${{ matrix.platform.target }}
path: dist
- name: pytest
if: ${{ startsWith(matrix.platform.target, 'x86_64') }}
shell: bash
run: |
set -e
python3 -m venv .venv
source .venv/bin/activate
pip install scatac_fragment_tools --find-links dist --force-reinstall
pip install pytest
pytest
- name: pytest
if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }}
uses: uraimo/run-on-arch-action@v2
with:
arch: ${{ matrix.platform.target }}
distro: ubuntu22.04
githubToken: ${{ github.token }}
install: |
apt-get update
apt-get install -y --no-install-recommends python3 python3-pip gcc
pip3 install -U pip pytest
run: |
set -e
pip3 install scatac_fragment_tools --find-links dist --force-reinstall
pytest
macos:
runs-on: macos-latest
runs-on: ${{ matrix.platform.runner }}
strategy:
matrix:
target: [x86_64, aarch64]
platform:
- runner: macos-12
target: x86_64
- runner: macos-14
target: aarch64
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
python-version: 3.x
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist --find-interpreter
target: ${{ matrix.platform.target }}
args: --release --out dist
sccache: 'true'
- name: Upload wheels
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: wheels
name: wheels-macos-${{ matrix.platform.target }}
path: dist
- name: pytest
run: |
set -e
python3 -m venv .venv
source .venv/bin/activate
pip install scatac_fragment_tools --find-links dist --force-reinstall
pip install pytest
pytest
sdist:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4
- name: Build sdist
uses: PyO3/maturin-action@v1
with:
command: sdist
args: --out dist
- name: Upload sdist
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: wheels
name: wheels-sdist
path: dist

release:
name: Release
environment: release
runs-on: ubuntu-latest
if: "startsWith(github.ref, 'refs/tags/')"
needs: [linux, macos, sdist]
permissions:
id-token: write
steps:
- uses: actions/download-artifact@v3
with:
name: wheels
- uses: actions/download-artifact@v4
- name: Publish to PyPI
uses: PyO3/maturin-action@v1
env:
MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
with:
command: upload
args: --non-interactive --skip-existing *
args: --non-interactive --skip-existing wheels-*/*

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