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  1. phylotreelib phylotreelib Public

    Library for analyzing and manipulating phylogenetic trees

    Python 12 2

  2. sequencelib sequencelib Public

    Library for analyzing and manipulating DNA and protein sequences

    Python

  3. seqconverter seqconverter Public

    Command-line program for reading, writing, analyzing, and manipulating sequence files

    Python 4

  4. sumt sumt Public

    Computes consensus trees and other phylogenetic tree summaries

    Python 1

  5. treedist treedist Public

    Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and unique bipartitions.

    Python

  6. substmodels substmodels Public

    Lecture notes on DNA substitution models

    RMarkdown