A simple and "fast" brain registration example
We use a brain mask to restrict the registration focus
Similar strategies may be used for brains with missing data e.g. lesions
Both cases are illustrated in this example script.
Before running the script make sure the ANTs executable directory is in your default path.
Run the script from the BasicBrainMapping directory like this:
./bbm.sh ./data/IXI/T_template2.nii.gz ./data/IXI594-Guys-1089-T1.nii.gz ./data/IXI/T_templateExtractionMask.nii.gz
