Clean up cru ts dir

cru_ts/archive/create_env.sh

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+#!/bin/bash
+
+conda env create -f environment.yml

cru_ts/archive/environment.yml

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+name: cru_ts_405
+channels:
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _openmp_mutex=4.5=1_gnu
+  - ca-certificates=2021.5.25=h06a4308_1
+  - certifi=2021.5.30=py38h06a4308_0
+  - ld_impl_linux-64=2.35.1=h7274673_9
+  - libffi=3.3=he6710b0_2
+  - libgcc-ng=9.3.0=h5101ec6_17
+  - libgomp=9.3.0=h5101ec6_17
+  - libstdcxx-ng=9.3.0=hd4cf53a_17
+  - ncurses=6.2=he6710b0_1
+  - openssl=1.1.1k=h27cfd23_0
+  - pip=21.1.2=py38h06a4308_0
+  - python=3.8.10=h12debd9_8
+  - readline=8.1=h27cfd23_0
+  - setuptools=52.0.0=py38h06a4308_0
+  - sqlite=3.35.4=hdfb4753_0
+  - tk=8.6.10=hbc83047_0
+  - wheel=0.36.2=pyhd3eb1b0_0
+  - xz=5.2.5=h7b6447c_0
+  - zlib=1.2.11=h7b6447c_3
+  - pip:
+    - affine==2.3.0
+    - attrs==21.2.0
+    - cftime==1.5.0
+    - click==8.0.1
+    - click-plugins==1.1.1
+    - cligj==0.7.2
+    - netcdf4==1.5.6
+    - numpy==1.20.3
+    - pyparsing==2.4.7
+    - rasterio==1.2.4
+    - snuggs==1.4.7

cru_ts/archive/export_env.sh

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+#!/bin/bash
+
+conda env export > environment.yml

cru_ts/archive/jobscript

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+#!/bin/tcsh
+#PBS -N asg:cru_ts
+#PBS -l nodes=1:c18c:ppn=16
+#PBS -l walltime=24:00:00
+#PBS -j oe
+
+# init conda within new shell for job
+
+# vortex [nodespec c18a or c18c for vortex-alpha, ppn up to 12 or 16 for vortex / alpha]
+source "/usr/local/anaconda3-2021.05/etc/profile.d/conda.csh"
+module load anaconda3/2021.05
+
+# hima [nodespec: hima:nogpu, ppn up to 32]
+# source "/usr/local/anaconda3-4.4.0/etc/profile.d/conda.csh"
+# module load anaconda3/4.4.0
+
+
+unsetenv PYTHONPATH
+
+
+conda activate cru_ts_405
+
+setenv src_dir /sciclone/aiddata10/geo/master/source/geo-datasets
+# setenv src_dir /sciclone/home20/smgoodman/geo-datasets
+
+
+python ${src_dir}/cru_ts/extract_data.py