Dependencies: Update requirements for `kiwipy` and `plumpy` #4503

Job	Run time
validate-dependency-specification	7s
install-with-conda (3.9, true)	58s
install-with-pip	27s
install-with-conda (3.10, true)	51s
install-with-pip ([atomic_tools,docs,notebook,rest,tests,tui])	1m 18s
install-with-conda (3.11, true)	49s
install-with-conda (3.12, true)	45s
install-with-conda (false)	56s
resolve-pip-dependencies (3.9)	29s
resolve-pip-dependencies (3.10)	32s
create-conda-environment	42s
resolve-pip-dependencies (3.11)	31s
resolve-pip-dependencies (3.12)	53s
tests (3.9)	28m 34s
tests (3.10)	36m 45s
tests (3.11)	26m 31s
tests (3.12)	26m 57s
check-requirements	10s
	2h 8m 15s

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