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AIRR Standards v1.4.1

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@javh javh released this 24 Sep 21:35
· 222 commits to master since this release
72e3c3e

Version 1.4 of the AIRR Schema

Major Schema Changes:

  • Updated quantification fields in the Rearrangement and Clone schemas for better
    compatibility with single-cell and emerging technologies. Changes include new
    optional fields and modifications to the semantics of existing *_count fields.
  • Various new optional fields in the Study, Subject and Rearrangement schemas.
  • Modified how time points and template concentrations are stored in Sample and
    NucleicAcidProcessing Schemas.

New Experimental Schema:

  • Experimental releases of new single-cell associated schemas.
  • Experimental releases of germline reference and genotype schemas.
  • Experimental release of data aggregation schemas, including collections of repertoires
    and JSON/YAML files bundling multiple AIRR Data Model objects.

Major R and Python Library Changes:

  • Added support for generalized AIRR Data Model files and objects that bundle
    multiple data classes.
  • Deprecated support for files storing only Repertoire objects in favor of a general
    AIRR Data Model, which is backwards compatible with Repertoire metadata files.

Full Release Notes: