Add github action test for PDC #8
Workflow file for this run
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| name: Nextflow Stub Runs | ||
| on: | ||
| push: | ||
| branches: [ main ] | ||
| pull_request: | ||
| branches: [ '**' ] | ||
| jobs: | ||
| stub-run: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| config: [ | ||
| 'test-diann.config', | ||
| 'test-encyclopedia-narrow-gpf.config', | ||
| 'test-encyclopedia-wide-only.config' | ||
| 'test-diann-pdc.config', | ||
| ] | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v2 | ||
| - name: Run (${{ matrix.config }}) | ||
| run: | | ||
| echo "Installing Nextflow:" | ||
| curl -s https://get.nextflow.io | bash | ||
| chmod +x nextflow | ||
| echo "Running Nextflow stub with config: ${{ matrix.config }}" | ||
| ./nextflow run . -stub-run -c test-resources/${{ matrix.config }} | ||
