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DIA_QC_report Public
Tools to generate QC and batch reports from DIA proteomics data
Python Apache License 2.0 UpdatedJan 25, 2025 -
nf-dia-batch-correction Public
Forked from uw-maccosslab/nf-dia-batch-correctionPerform normalization and batch correction on one or more Skyline documents
Nextflow Apache License 2.0 UpdatedJan 25, 2025 -
nf-skyline-dia-ms Public
Forked from mriffle/nf-skyline-dia-msNextflow Apache License 2.0 UpdatedJan 24, 2025 -
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aws_bash Public
A minimal docker image which works on AWS batch with nextflow
Python UpdatedNov 8, 2024 -
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protein_scrape Public
Look up annotations for subcellular location by Uniprot ID.
Python UpdatedMay 21, 2024 -
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directlfq Public
Forked from MannLabs/directlfqFast and accurate label-free quantification for small and very large numbers of proteomes
Jupyter Notebook Apache License 2.0 UpdatedApr 23, 2024 -
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summarizeTable Public
Summarize headers and datatypes in tsv and csv files.
C++ UpdatedMar 28, 2024 -
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ionFinder Public
Forked from weerapana-lab/ionFinderSearch MS2 spectra for diagnostic neutral loss ions.
C++ MIT License UpdatedOct 17, 2023 -
RPeptideUtils Public
R package which wraps useful c++ functions for dealing with string representations of peptides
C++ UpdatedSep 29, 2023 -
oliver Public
Forked from NGeneBio-Genomics-Platform/oliverAn opinionated Cromwell orchestration manager.
Python MIT License UpdatedJul 3, 2023 -
envoMatch Public
Forked from weerapana-lab/envoMatchSearch for peptide isotopic envelopes in MS1 spectra.
Python UpdatedMay 9, 2023 -
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generateMsconvertConfig Public
Atempt to automatically generate an msconvert config file based off an mzML file's isolation windows.
Python MIT License UpdatedAug 1, 2022 -
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vim-wdl Public
Forked from broadinstitute/vim-wdlVim syntax highlighting for WDL
Vim Script UpdatedJun 29, 2022 -
container Public
Forked from ProteoWizard/containerOptions for running ProteoWizard applications via containers (e.g. Docker)
Dockerfile Apache License 2.0 UpdatedMay 23, 2022 -
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bibtexKey Public
Replace BibTex keys with author last name and year.
Python MIT License UpdatedOct 5, 2021