Update to version 0.1.1, rebuild docs

akoyabio · Oct 22, 2018 · 8cca5d6 · 8cca5d6
1 parent 033e430
commit 8cca5d6
Show file tree

Hide file tree

Showing 47 changed files with 299 additions and 46 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: phenoptrReports
 Title: Create reports using Phenoptics data
-Version: 0.1.0
-Date: 2018-10-15
+Version: 0.1.1
+Date: 2018-10-22
 Authors@R: c(
     person("Kent S", "Johnson", role = c("aut", "cre"),
            email = "[email protected]"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,5 @@
-# phenoptrReports 0.1.0.9000
+# phenoptrReports 0.1.1.0
+**2018-10-22**
 
 New features:
 - Add version number, date stamp and doco link to generated script file #2

diff --git a/README.md b/README.md
@@ -73,7 +73,7 @@ phenotype names should not end in "+".
 #### Merged cell seg data
 
 The primary source data for `phenoptrReports` is 
-one or more merged cell seg data files created in the inForm merge step.
+one or more merged cell seg data files created in the inForm Review/Merge tab.
 You may use multiple merge files from multiple inForm projects with different 
 phenotypes. The Slide ID and Cell ID fields in multiple merge files 
 must agree exactly. 

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/analysis.html b/docs/articles/analysis.html
diff --git a/docs/articles/consolidation.html b/docs/articles/consolidation.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/favicon.ico b/docs/favicon.ico
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/reference/add_tissue_category_totals.html b/docs/reference/add_tissue_category_totals.html
diff --git a/docs/reference/analysis_app.html b/docs/reference/analysis_app.html
diff --git a/docs/reference/check_phenotypes.html b/docs/reference/check_phenotypes.html
diff --git a/docs/reference/compute_density_from_cell_summary.html b/docs/reference/compute_density_from_cell_summary.html
diff --git a/docs/reference/compute_density_from_table.html b/docs/reference/compute_density_from_table.html
diff --git a/docs/reference/compute_h_score.html b/docs/reference/compute_h_score.html
diff --git a/docs/reference/compute_h_score_from_score_data.html b/docs/reference/compute_h_score_from_score_data.html
diff --git a/docs/reference/compute_mean_expression.html b/docs/reference/compute_mean_expression.html
diff --git a/docs/reference/compute_mean_expression_many.html b/docs/reference/compute_mean_expression_many.html
diff --git a/docs/reference/compute_positivity.html b/docs/reference/compute_positivity.html
diff --git a/docs/reference/compute_positivity_many.html b/docs/reference/compute_positivity_many.html
diff --git a/docs/reference/count_phenotypes.html b/docs/reference/count_phenotypes.html
diff --git a/docs/reference/counts_to_percents.html b/docs/reference/counts_to_percents.html