Releases: akoyabio/phenoptrReports
Releases · akoyabio/phenoptrReports
v0.1.4
New features:
- Component levels report shows signal levels of bright and dark pixels
in multiplex images.
Misc:
- Unmixing quality report works when DAPI and AF components are not present.
consolidate_and_summarize_cell_seg_data
processes files pairwise
for reduced memory requirements.- Better error handling in
consolidate_and_summarize_cell_seg_data
. - Removed
consolidate_and_split_cell_seg_data
v0.1.3
New features:
- New RStudio Addin - "Merge cell seg files" merges inForm output from
individual fields, similar to the inForm Merge tab. merge_cell_seg_files
function performs the merge.
Misc:
- Update the link to Phenoptics home page.
compute_mean_expression_many
ignores duplicate parameter definitions
instead of stopping with an obscure error.compute_density_from_cell_summary
doesn't require aPhenotype
column
in the cell seg summary data.split_phenotypes
doesn't require aConfidence
column in the source data.split_phenotypes
recognizes whitespace as a phenotype separator.
Version 0.1.1
New features:
- Add version number, date stamp and doco link to generated script file #2
- Add H-Score chart to the generated charts
- Add Akoya logo to footer in chart report
Bug fixes:
- Fix order of slides in Mean Expression report
- Don't crash cell seg summary report when a slide has only one phenotype
- Correctly report number of fields for data derived from a whole-slide scan