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Releases: akoyabio/phenoptrReports

v0.1.4

04 Dec 20:27
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New features:

  • Component levels report shows signal levels of bright and dark pixels
    in multiplex images.

Misc:

  • Unmixing quality report works when DAPI and AF components are not present.
  • consolidate_and_summarize_cell_seg_data processes files pairwise
    for reduced memory requirements.
  • Better error handling in consolidate_and_summarize_cell_seg_data.
  • Removed consolidate_and_split_cell_seg_data

v0.1.3

05 Nov 17:41
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New features:

  • New RStudio Addin - "Merge cell seg files" merges inForm output from
    individual fields, similar to the inForm Merge tab.
  • merge_cell_seg_files function performs the merge.

Misc:

  • Update the link to Phenoptics home page.
  • compute_mean_expression_many ignores duplicate parameter definitions
    instead of stopping with an obscure error.
  • compute_density_from_cell_summary doesn't require a Phenotype column
    in the cell seg summary data.
  • split_phenotypes doesn't require a Confidence column in the source data.
  • split_phenotypes recognizes whitespace as a phenotype separator.

Version 0.1.1

22 Oct 14:12
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New features:

  • Add version number, date stamp and doco link to generated script file #2
  • Add H-Score chart to the generated charts
  • Add Akoya logo to footer in chart report

Bug fixes:

  • Fix order of slides in Mean Expression report
  • Don't crash cell seg summary report when a slide has only one phenotype
  • Correctly report number of fields for data derived from a whole-slide scan