MPAS-Analysis

A repository for the development and maintenance of MPAS analysis tools.

Analysis is stored in a directory corresponding to each core component, e.g., ocean for MPAS-Ocean. Shared functionality is contained within the shared directory.

Installation

This analysis repository presumes that the following python packages are available:

• numpy
• scipy
• matplotlib
• numexpr
• ipython-notebook
• netCDF4
• progressbar
• vtk
• pyevtk with conda install -c https://conda.anaconda.org/opengeostat pyevtk
• cartopy with conda install -c scitools cartopy
• xarray
• dask
• bottleneck
• basemap

You can easily install them via the conda command:

conda install -c scitools  -c https://conda.anaconda.org/opengeostat numpy scipy matplotlib ipython notebook netCDF4 progressbar vtk cartopy xarray dask bottleneck pyevtk numexpr basemap

Running the analysis

1. create a configuration file by copying and modifying config.template or one of the example files in configs
2. run: ./run_analysis.py config.myrun, where config.myrun is the config file you created
3. If you want to run a subset of the analysis, you can either modify the generate option under [output] in the config file or use the --generate flag on the command line. See config.template for more details.