Pinned Loading

1. Preliminary-CpG-Data-Analysis Preliminary-CpG-Data-Analysis Public

   PacBio Jasmine pipeline, penalized regression, and DMR identification

   Shell 2

2. RNAseq-for-SGenes RNAseq-for-SGenes Public

   Creation of a gene expression atlas in strawberry for the purpose of visualizing expression of susceptibility genes

   Shell 1 1

3. NLR-Identification-and-Visualization NLR-Identification-and-Visualization Public

   Identification of nlr loci with NLR_Annotator, plus visualization and analyses

   Shell

4. HRP-Pipeline HRP-Pipeline Public

   My documentation for running the full-length homology-based r gene prediction pipeline, complete with scripts. Fills in gaps of the official pipeline.

   Shell

5. Depth-Over-CDS Depth-Over-CDS Public

   Workflow to visualize read depth over the coding sequence of a gene

   Shell

6. WGS-Variant-Library WGS-Variant-Library Public

   calling variants from publicly available strawberry WGS data in order to screen for potentially deleterious mutations in genes of interest

   Shell