Release v0.5.0

.github/workflows/package.yml

@@ -262,10 +262,10 @@ jobs:
     name: Release
     needs: upload
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: true
-    - uses: rasmus-saks/release-a-changelog-action@v1.0.1
+    - uses: rasmus-saks/release-a-changelog-action@v1.2.0
       with:
         github-token: '${{ secrets.GITHUB_TOKEN }}'
 

CHANGELOG.md

@@ -6,7 +6,25 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyfamsa/compare/v0.4.0...HEAD
+[Unreleased]: https://github.com/althonos/pyfamsa/compare/v0.5.0...HEAD
+
+
+## [v0.5.0] - 2024-08-28
+[v0.5.0]: https://github.com/althonos/pyfamsa/compare/v0.4.0...v0.5.0
+
+### Added
+- Constructor to `GappedSequence` class, taking an identifier and a sequence as `bytes` objects.
+- Constructor to `Alignment` class, taking an iterable of `GappedSequence` object.
+- `Alignment.copy` implementation.
+- Slicing implementation to `Alignment`.
+- `Aligner.align_profiles` function to align two profiles ([#5](https://github.com/althonos/pyfamsa/issues/5)).
+
+### Fixed
+- Pin supported versions of `scoring-matrices` package to `~=0.2.0`.
+
+### Changed
+- Use C++ `shared_ptr` in `GappedSequence` and `Alignment` to avoid copying data when possible.
+- Migrate documentation to `pydata-sphinx-theme`.
 
 
 ## [v0.4.0] - 2024-05-06

docs/_static/json/switcher.json

@@ -1,8 +1,13 @@
 [
     {
-        "name": "v0.4 (latest)",
+        "name": "v0.5 (latest)",
+        "version": "0.5.0",
+        "url": "https://pyfamsa.readthedocs.io/en/v0.5.0/"
+    },
+    {
+        "name": "v0.4",
         "version": "0.4.0",
-        "url": "https://pyfamsa.readthedocs.io/en/v0.3.3/"
+        "url": "https://pyfamsa.readthedocs.io/en/v0.4.0/"
     },
     {
         "name": "v0.3",

pyfamsa/_famsa.pyx

@@ -645,6 +645,8 @@ cdef class Aligner:
         Returns:
             `~pyfamsa.Alignment`: The resulting profile-profile alignment.
 
+        .. versionadded:: 0.5.0
+
         """
         cdef int                      i
         cdef int                      j

pyfamsa/_version.py

@@ -1 +1 @@
-__version__ = "0.4.0"
+__version__ = "0.5.0"