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Attempt fixing segmentation fault on MacOS in GitHub Actions
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althonos committed Feb 15, 2024
1 parent ea70f86 commit 9fd736a
Showing 1 changed file with 45 additions and 44 deletions.
89 changes: 45 additions & 44 deletions .github/workflows/test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -79,38 +79,38 @@ jobs:
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true

test_linux_arm64:
name: Test (Linux, arm64)
runs-on: ubuntu-latest
strategy:
matrix:
python-tag:
- cp310-manylinux_aarch64
- cp311-manylinux_aarch64
steps:
- uses: actions/checkout@v3
with:
submodules: true
- name: Set up QEMU
id: qemu
uses: docker/setup-qemu-action@v2
with:
platforms: all
- name: Build manylinux wheels
uses: pypa/[email protected]
env:
CIBW_ARCHS: aarch64
CIBW_BUILD: ${{ matrix.python-tag }}
CIBW_BUILD_VERBOSITY: 2
CIBW_BEFORE_BUILD: pip install cython
CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
CIBW_TEST_REQUIRES: importlib-resources
with:
output-dir: dist
- uses: actions/upload-artifact@v3
with:
name: wheels
path: dist/*
# test_linux_arm64:
# name: Test (Linux, arm64)
# runs-on: ubuntu-latest
# strategy:
# matrix:
# python-tag:
# - cp310-manylinux_aarch64
# - cp311-manylinux_aarch64
# steps:
# - uses: actions/checkout@v3
# with:
# submodules: true
# - name: Set up QEMU
# id: qemu
# uses: docker/setup-qemu-action@v2
# with:
# platforms: all
# - name: Build manylinux wheels
# uses: pypa/[email protected]
# env:
# CIBW_ARCHS: aarch64
# CIBW_BUILD: ${{ matrix.python-tag }}
# CIBW_BUILD_VERBOSITY: 2
# CIBW_BEFORE_BUILD: pip install cython
# CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
# CIBW_TEST_REQUIRES: importlib-resources
# with:
# output-dir: dist
# - uses: actions/upload-artifact@v3
# with:
# name: wheels
# path: dist/*

test_osx_x86:
name: Test (OSX)
Expand Down Expand Up @@ -175,15 +175,16 @@ jobs:
run: python -m pip install -r pyhmmer/tests/requirements.txt
if: matrix.python-impl == 'CPython'
- name: Test with coverage
run: python -m coverage run -m unittest discover -vv
- name: Upload to Codecov
uses: codecov/codecov-action@v3
if: matrix.python-impl == 'CPython'
with:
flags: ${{ matrix.python-release }}
env_vars: OS
name: test-python-${{ matrix.python-version }}
fail_ci_if_error: false
token: ${{ secrets.CODECOV_TOKEN }}
codecov_curl_args: "--globoff"
verbose: true
run: python -m unittest discover -vv
# run: python -m coverage run -m unittest discover -vv
# - name: Upload to Codecov
# uses: codecov/codecov-action@v3
# if: matrix.python-impl == 'CPython'
# with:
# flags: ${{ matrix.python-release }}
# env_vars: OS
# name: test-python-${{ matrix.python-version }}
# fail_ci_if_error: false
# token: ${{ secrets.CODECOV_TOKEN }}
# codecov_curl_args: "--globoff"
# verbose: true

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