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27 Open 107 Closed
27 Open 107 Closed
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Issues list

Extend Alt contigs option to allow mapping to two haplotypes genomes.
#169 opened Dec 12, 2023 by ghuls
Feature request: name sort output
#166 opened Apr 5, 2023 by matthdsm
mapping HiC read
#165 opened Feb 25, 2023 by yangfangyuan0102
bug (?): unexpected results with enforced interval size greater than default
#162 opened Oct 15, 2022 by eboyden
4
feature request: print LB/PL/PU/SM tags only in @RG header line
#159 opened Oct 3, 2022 by eboyden
Feature request: markduplicate metrics and settings
#158 opened Aug 25, 2022 by matthdsm
Indel calling
#154 opened May 31, 2022 by kokyriakidis
3
feature request: option to mark optical duplicates only
#147 opened Jan 6, 2022 by eboyden
1
Duplicate marking produces malformed QS tags in SAM output
#145 opened Jan 6, 2022 by eboyden
@bolosky
3
better handling of complex indel situations
#143 opened Dec 27, 2021 by bwlang
3
Original fastq order
#127 opened Nov 11, 2020 by jkbonfield
2
-F option yielding incongruous output
#119 opened Feb 25, 2019 by cxr5298
Test failure on ppc64 and sparc64
#112 opened Dec 21, 2017 by tillea
Test suite failure on ppc64 and sparc64 architectures
#110 opened Dec 20, 2017 by tillea
Public docker image?
#101 opened Jul 19, 2017 by sminot
2
'SNAPCommand exit' doesn't when previous job killed.
#90 opened May 22, 2017 by taltman
Typo in Makefile for building snapxl
#89 opened May 22, 2017 by taltman
Error message about long reads needs to be updated
#88 opened May 22, 2017 by taltman
can you help explain the question about the RAM used by snap
#86 opened Mar 29, 2017 by wangzhenkeep
Build requires 188 GB of memory (fortunately not used, just allocated)
#82 opened Jan 30, 2017 by tillea
1
SNAP crashes when it tries to generate a BAM file with > 2GB header
#76 opened Aug 18, 2016 by bolosky
@rnpandya
Inconsistent BAM output from identical inputs
#72 opened Apr 4, 2016 by blahah
5
Tiny fraction of reads mapped
#61 opened Nov 1, 2015 by blahah
10
Invalid SM tag in sam record
#54 opened Jun 24, 2015 by kevyin
snap not running with -t option of 1 or 2 on Mac OS X
#38 opened Dec 8, 2014 by wm75
ProTip! Find all open issues with in progress development work with linked:pr.