Merge pull request #28 from niemasd/master

Fixed consensus sequence concatenation
andersen-lab · Dec 11, 2023 · b893d56 · b893d56
2 parents f1fa98b + e9b97bc
commit b893d56
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/combine-and-release.yml b/.github/workflows/combine-and-release.yml
@@ -9,8 +9,8 @@ jobs:
     steps:
       - name: Set up Git repository
         uses: actions/checkout@v2
-      - name: Concatinate consensus sequences
-        run: cat consensus_sequences/*.fasta | gzip -9 > consensus_sequences.fasta.gz
+      - name: Concatenate consensus sequences
+        run: find consensus_sequences -type f -name '*.fasta' | xargs cat | gzip -9 > consensus_sequences.fasta.gz
       - name: Generate release tag
         id: tag
         run: |