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skipfeat(repeats): skipping more tests that are too data heavy.
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andreasprlic committed Sep 19, 2024
1 parent 703efbf commit bb7eb3c
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions tests/test_repeats.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@

from hgvs.assemblymapper import AssemblyMapper
from parameterized import parameterized
import time
import pytest
import hgvs
import hgvs.dataproviders
Expand All @@ -19,7 +18,8 @@ def to_hgvs_repeat(chrom_ac, fs: VariantCoords , ra: RepeatAnalyser):
"""
return f"{chrom_ac}:g.{fs.start+1}_{fs.end}{ra.alt_str}"



@pytest.mark.skip(reason="too data hungry")
class TestHGVSExamples(unittest.TestCase):
""" The variants in this class are taken from the HGVS nomenclature page about repeats
https://hgvs-nomenclature.org/stable/recommendations/DNA/repeated/
Expand Down Expand Up @@ -114,6 +114,7 @@ def test_ATXN7_repeat(self):
# invalid HGVS, due to the shuffle-able bases, but comes pretty close to what HGVS recommends.
assert to_hgvs_repeat(var_g.ac, fs, ra2) == 'NC_000003.12:g.63912685_63912716G[1]C[1]AGC[13]'

@pytest.mark.skip(reason="too data hungry")
class TestRepeats(unittest.TestCase):

@classmethod
Expand Down Expand Up @@ -214,6 +215,8 @@ def test_large_variant(self):
ra = RepeatAnalyser(fs)
assert not ra.is_repeat


class TestRepeatMethods:

@parameterized.expand(
[
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