v0.13.0

Changelog

Added

• data.set_processing(...) now expose an autocast parameter to disable or tweak the automatic casting of the tensor
  during the processing. Autocasting should result in a slight speedup, but may lead to numerical instability.
• Use torch.inference_mode to disable view tracking and version counter bumps during inference.
• Added a new NER pipeline for suicide attempt detection
• Added date cues (regular expression matches that contributed to a date being detected) under the extension ent._.date_cues
• Added tables processing in eds.measurement
• Added 'all' as possible input in eds.measurement measurements config
• Added new units in eds.measurement

Changed

• Default to mixed precision inference

Fixed

• edsnlp.load("your/huggingface-model", install_dependencies=True) now correctly resolves the python pip
  (especially on Colab) to auto-install the model dependencies
• We now better handle empty documents in the eds.transformer, eds.text_cnn and eds.ner_crf components
• Support mixed precision in eds.text_cnn and eds.ner_crf components
• Support pre-quantization (<4.30) transformers versions
• Verify that all batches are non empty
• Fix span_context_getter for context_words = 0, context_sents > 2 and support assymetric contexts
• Don't split sentences on rare unicode symbols
• Better detect abbreviations, like E.coli, now split as [E., coli] and not [E, ., coli]

What's Changed

• Various ml fixes by @percevalw in #303
• TS by @aricohen93 in #269
• date cues by @cvinot in #265
• Fix fast inference by @percevalw in #305
• Fix typo in diabetes patterns by @isabelbt in #306
• Fix span context getter by @aricohen93 in #307
• Fix sentences by @percevalw in #310
• chore: bump version to 0.13.0 by @percevalw in #312

New Contributors

• @cvinot made their first contribution in #265
• @isabelbt made their first contribution in #306

Full Changelog: v0.12.3...v0.13.0