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Tests for particle diffusion II#2245

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boeschf wants to merge 27 commits intoarbor-sim:masterarbor-sim/arbor:masterfrom boeschf:fix/diffusive_concentrations_jluboboeschf/arbor:fix/diffusive_concentrations_jluboCopy head branch name to clipboard

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Commits on Aug 24, 2023

• Tests for particle diffusion added (for different morphologies; also pointing to the fact that the diffusion across segments of different radius is still erroneous; see arbor-sim#2145)

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• Black style formatting applied

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• Black style formatting (v23.7.0) applied

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• Cleanup

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• Black reformatting

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• Revision: list of dictionaries for stimulation added; small improvements

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• Split function to reduce complexity (following flake8 complaint)

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• Black style applied

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Commits on Aug 25, 2023

• Revision: discretization policy simplified

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Commits on Sep 27, 2023

• tests for different segment length added (also fail as of v0.9.0); code readability improved

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• Merge branch 'master' into tests_for_particle_diffusion

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Commits on Oct 7, 2023

• fix: apply 'estimated' tests only if radius is fixed

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Commits on Oct 10, 2023

• disabled 'test_diffusion_different_length' and 'test_diffusion_different_radii' again (for as long as the related fix is not merged)

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Commits on Oct 12, 2023

• generalized tests for 'estimated' equilibrium values; annotations added

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• Merge branch 'master' into tests_for_particle_diffusion

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Commits on Oct 14, 2023

• fixed estimated values in two segment-case

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• split function 'get_morph_and_decor()' into special cases for 1,2,3 segments

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Commits on Jan 9, 2024

• scratch field for diffusion

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• Merge remote-tracking branch 'upstream/master' into fix/diffusive_concentrations

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Commits on Jan 10, 2024

• gpu fix: backend, shfl_down signature, gpu printer

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• Merge remote-tracking branch 'jlubo/tests_for_particle_diffusion' into fix/diffusive_concentrations_jlubo

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• hack to remove wrong ballot

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• Merge branch 'fix/diffusive_concentrations' into fix/diffusive_concentrations_jlubo

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• probe labels

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• test diffusion different length

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• formatting

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• Merge branch 'fix/diffusive_concentrations_jlubo' of github.com:boeschf/arbor into fix/diffusive_concentrations_jlubo

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