Added --MD to minimap2 for methylation tags #102

	name: Build Docker images and test pipeline

	on:
	push:

	jobs:

	build-docker:
	strategy:
	matrix:
	IMAGE_NAME: ['dorado', 'megalodon', 'minimap2', 'nanopolish', 'bedops', 'bedtools', 'nanohime', 'ontfast5api', 'modkit']

	name: Build Docker
	runs-on: ubuntu-latest

	# Add "id-token" with the intended permissions.
	permissions:
	contents: 'read'
	id-token: 'write'

	steps:
	- name: Checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	# Configure Workload Identity Federation and generate an access token.
	- id: 'auth'
	name: 'Authenticate to Google Cloud'
	uses: 'google-github-actions/auth@v0'
	with:
	workload_identity_provider: 'projects/303574531351/locations/global/workloadIdentityPools/github-actions-pool/providers/github-provider'
	service_account: '[email protected]'

	# Setup gcloud CLI
	- name: Set up Cloud SDK
	uses: google-github-actions/setup-gcloud@v0

	# Build and push image to Google Container Registry
	- name: Build
	run: \|-
	GIT_TAG=$(git describe --tags)
	gcloud builds submit \
	--config Docker/cloudbuild.yaml \
	--region=us-central1 \
	--substitutions _GIT_TAG=$GIT_TAG,_IMAGE_NAME=${{ matrix.IMAGE_NAME }}

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