R scripts used to create figures for manuscript The Undiscovered Biosynthetic Potential of the Greenland Ice Sheet Microbiome (in prep, by Ate H. Jaarsma)
We used R version 4.1.2 (R Core Team 2021) and the following R packages: ggpubr v. 0.6.0 (Kassambara 2023a), ggsci v. 3.0.0 (Xiao 2023), grateful v. 0.1.11 (Rodríguez-Sánchez, Jackson, and Hutchins 2022), hrbrthemes v. 0.8.0 (Rudis 2020), rstatix v. 0.7.2 (Kassambara 2023b), tidyverse v. 1.3.2 (Wickham et al. 2019), VennDiagram v. 1.7.3 (Chen 2022), viridis v. 0.6.2 (Garnier et al. 2021).
Package citations Chen, Hanbo. 2022. VennDiagram: Generate High-Resolution Venn and Euler Plots. https://CRAN.R-project.org/package=VennDiagram. Garnier, Simon, Ross, Noam, Rudis, Robert, Camargo, et al. 2021. viridis - Colorblind-Friendly Color Maps for r. https://doi.org/10.5281/zenodo.4679424. Kassambara, Alboukadel. 2023a. Ggpubr: ’Ggplot2’ Based Publication Ready Plots. https://CRAN.R-project.org/package=ggpubr. ———. 2023b. Rstatix: Pipe-Friendly Framework for Basic Statistical Tests. https://CRAN.R-project.org/package=rstatix. R Core Team. 2021. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/. Rodríguez-Sánchez, Francisco, Connor P. Jackson, and Shaurita D. Hutchins. 2022. Grateful: Facilitate Citation of r Packages. https://github.com/Pakillo/grateful. Rudis, Bob. 2020. Hrbrthemes: Additional Themes, Theme Components and Utilities for ’Ggplot2’. https://CRAN.R-project.org/package=hrbrthemes. Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. “Welcome to the tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686. Xiao, Nan. 2023. Ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for ’Ggplot2’. https://CRAN.R-project.org/package=ggsci.