added download test data step for unit tests

baliga-lab · Mar 11, 2024 · 3c3ed70 · 3c3ed70
1 parent fd0c340
commit 3c3ed70
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Showing 3 changed files with 71 additions and 41 deletions.
diff --git a/.github/workflows/python-test.yml b/.github/workflows/python-test.yml
@@ -23,6 +23,10 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
+    - name: Download and extract test data
+      run: |
+      	wget https://networks.systemsbiology.net/downloads/miner-examples/miner_mindata.tar.gz
+	tar xfz miner_mindata.tar.gz
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v5
       with:

diff --git a/Example MINER Analysis.ipynb b/Example MINER Analysis.ipynb
diff --git a/test/preprocess_test.py b/test/preprocess_test.py
@@ -1,5 +1,6 @@
 #!/usr/bin/env python3
 import sys
+import os
 import pytest
 
 #import pandas as pd
@@ -61,3 +62,6 @@ def test_preprocess_main_simple(self):
 
 def test_dummy():
     pass
+
+def test_has_testdir():
+    assert os.path.exists('miner_mindata')