fix import and name reference errors

baliga-lab · Aug 30, 2024 · 602d151 · 602d151
1 parent f99a291
commit 602d151
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diff --git a/miner/coexpression.py b/miner/coexpression.py
@@ -6,6 +6,7 @@
 import logging
 import json
 import numpy as np
+import sys
 
 from miner import miner, util
 

diff --git a/miner/miner.py b/miner/miner.py
@@ -1291,7 +1291,7 @@ def regulonExpansion(task):
     reference_index = np.array(eigengenes.index).astype(str)
     expanded_modules = {key:regulonModules[key] for key in regulonModules.keys()}
     ct = -1
-    printProgressBar(0, maxStep, prefix='Progress:', suffix='Complete',
+    printProgressBar(0, len(genes), prefix='Progress:', suffix='Complete',
                      length=50)
     genes = list(set(list(tfbsdbGenes.keys()))&set(expressionData.index))[start:stop]
     for gene in genes: