init repository from sklearn contrib template

.coveragerc

@@ -0,0 +1,6 @@
+# Configuration for coverage.py
+
+[run]
+branch = True
+source = fsvm
+include = */fsvm/*

.github/dependabot.yml

@@ -0,0 +1,18 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions as recommended in SPEC8:
+  # https://github.com/scientific-python/specs/pull/325
+  # At the time of writing, release critical workflows such as
+  # pypa/gh-action-pypi-publish should use hash-based versioning for security
+  # reasons. This strategy may be generalized to all other github actions
+  # in the future.
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+    groups:
+      actions:
+        patterns:
+          - "*"
+    reviewers:
+      - "glemaitre"

.github/workflows/deploy-gh-pages.yml

@@ -0,0 +1,37 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+    - main
+  pull_request:
+    branches:
+      - main
+
+permissions:
+  contents: write
+
+jobs:
+  deploy-gh-pages:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+    - uses: prefix-dev/[email protected]
+      with:
+        pixi-version: v0.23.0
+        environments: doc
+        frozen: true
+
+    - name: Build documentation
+      run: pixi run -e doc build-doc
+
+    - name: Update the main gh-page website
+      if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+      uses: peaceiris/[email protected]
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./doc/_build/html
+        commit_message: "[ci skip] ${{ github.event.head_commit.message }}"

.github/workflows/lint.yml

@@ -0,0 +1,23 @@
+name: Linter
+
+on:
+  push:
+    branches:
+    - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: prefix-dev/[email protected]
+        with:
+          pixi-version: v0.23.0
+          environments: lint
+          frozen: true
+
+      - name: Run linter
+        run: pixi run -e lint lint

.github/workflows/python-app.yml

@@ -0,0 +1,33 @@
+name: Unit Tests
+
+on:
+  push:
+    branches:
+    - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [windows-latest, ubuntu-latest, macos-latest, macos-12]
+        environment: [test]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: prefix-dev/[email protected]
+        with:
+          pixi-version: v0.23.0
+          environments: ${{ matrix.environment }}
+          frozen: true
+
+      - name: Run tests
+        run: pixi run -e ${{ matrix.environment }} test
+
+      - name: Upload coverage reports to Codecov
+        uses: codecov/[email protected]
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          slug: balins/fsvm

.gitignore

@@ -0,0 +1,78 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# scikit-learn specific
+doc/_build/
+doc/auto_examples/
+doc/modules/generated/
+doc/datasets/generated/
+
+# Distribution / packaging
+
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+doc/_build/
+doc/generated/
+doc/sg_execution_times.rst
+
+# PyBuilder
+target/
+
+.pixi
+
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# auto-generated files
+fsvm/_version.py

.pre-commit-config.yaml

@@ -0,0 +1,16 @@
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+    -   id: check-yaml
+    -   id: end-of-file-fixer
+    -   id: trailing-whitespace
+-   repo: https://github.com/psf/black
+    rev: 23.3.0
+    hooks:
+    -   id: black
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.0.272
+    hooks:
+    -   id: ruff
+        args: ["--fix", "--show-source"]

LICENSE

@@ -0,0 +1,27 @@
+Copyright (c) 2016, Vighnesh Birodkar and scikit-learn-contrib contributors
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of scikit-learn-contrib nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

@@ -0,0 +1,18 @@
+project-template - A template for scikit-learn contributions
+============================================================
+
+![tests](https://github.com/balins/fsvm/actions/workflows/python-app.yml/badge.svg)
+[![codecov](https://codecov.io/gh/balins/fsvm/graph/badge.svg?token=L0XPWwoPLw)](https://codecov.io/gh/balins/fsvm)
+![doc](https://github.com/balins/fsvm/actions/workflows/deploy-gh-pages.yml/badge.svg)
+
+**project-template** is a template project for [scikit-learn](https://scikit-learn.org)
+compatible extensions.
+
+It aids development of estimators that can be used in scikit-learn pipelines and
+(hyper)parameter search, while facilitating testing (including some API compliance),
+documentation, open source development, packaging, and continuous integration.
+
+Refer to the documentation to modify the template for your own scikit-learn
+contribution: https://contrib.scikit-learn.org/project-template
+
+*Thank you for cleanly contributing to the scikit-learn ecosystem!*