remove redundancy for GO db

bcbio · Jan 17, 2025 · dc69aa5 · dc69aa5
1 parent 349fc06
commit dc69aa5
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/inst/templates/rnaseq/00_libs/FA.R b/inst/templates/rnaseq/00_libs/FA.R
@@ -3,14 +3,14 @@ library(clusterProfiler)
 source <- "https://github.com/bcbio/resources/raw/refs/heads/main/gene_sets/gene_sets/20240904"
 get_databases_v2=function(sps="human"){
   gmt.files=list(human=c("h.all.v2024.1.Hs.entrez.gmt",
-                         "c5.go.v2024.1.Hs.entrez.gmt",
+                         #"c5.go.v2024.1.Hs.entrez.gmt",
                          "c5.go.mf.v2024.1.Hs.entrez.gmt",
                          "c5.go.cc.v2024.1.Hs.entrez.gmt",
                          "c5.go.bp.v2024.1.Hs.entrez.gmt",
                          "c2.cp.reactome.v2024.1.Hs.entrez.gmt",
                          "c2.cp.kegg_legacy.v2024.1.Hs.entrez.gmt"),
                  mouse=c("mh.all.v2024.1.Mm.entrez.gmt",
-                         "m5.go.v2024.1.Mm.entrez.gmt",
+                         #"m5.go.v2024.1.Mm.entrez.gmt",
                          "m5.go.mf.v2024.1.Mm.entrez.gmt",
                          "m5.go.cc.v2024.1.Mm.entrez.gmt",
                          "m5.go.bp.v2024.1.Mm.entrez.gmt",