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JustinChu authored Mar 25, 2019
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## 1. Generating Multi-Index Bloom Filters from Reference Sequences with biobloommimaker

Before you can index your fasta files a reverse complement version of them must first be generated with the `util/genRV.sh` script:
```bash
util/genRV.sh input1.fa input2.fa
```
it will output `<fasta>.rv` files for each fasta file listed.

A `<prefix>.bf`, `<prefix>.bf.sdsl` and `<prefix>_ids.txt` can be created by running the command:
```bash
./biobloommimaker -p filterName -S "01111011100000011111101110000111100100000101001001011100011000010111101001100011 10101101001111010011100101110001111111111010010000110011001000100100011100001000 00010000111000100100010011001100001001011111111110001110100111001011110010110101 11000110010111101000011000111010010010100000100111100001110111111000000111011110" input1.fasta ...
```
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