Merge pull request #16 from bento-platform/fix/migration

fix: v0.2 migration (+ update dependencies)

bento_reference_service/sql/migrate_v0_2.sql

@@ -1,5 +1,6 @@
 -- Run these commands before migrating to v0.2.x
 
+DROP TABLE genome_feature_parents CASCADE;
 DROP TABLE genome_feature_annotations CASCADE;
 DROP TABLE genome_features CASCADE;
 DROP TABLE IF EXISTS genome_feature_type_synonyms;  -- from v0.1, now unused

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "bento_reference_service"
-version = "0.2.1"
+version = "0.2.2"
 description = "Reference data (genomes & annotations) service for the Bento platform."
 authors = [
     "David Lougheed <[email protected]>",
@@ -27,8 +27,8 @@ classifiers = [
 python = "^3.10.0"
 fastapi = {extras = ["all"], version = "^0.111.1"}
 pydantic = "^2.6.1"
-bento-lib = {extras = ["fastapi"], version = "^11.11.0"}
-aiofiles = "^23.2.1"
+bento-lib = {extras = ["fastapi"], version = "^11.11.2"}
+aiofiles = "^24.1.0"
 pysam = "~0.22.0"
 jsonschema = "^4.21.1"
 pydantic-settings = "^2.1.0"
@@ -44,7 +44,7 @@ pytest = "^8.2.1"
 pytest-asyncio = "^0.23.5"
 pytest-cov = "^5.0.0"
 tox = "^4.12.1"
-fasta-checksum-utils = "^0.4.1"
+fasta-checksum-utils = "^0.4.3"
 
 [tool.black]
 line_length = 120