gohan url from config

bento-platform · Aug 22, 2023 · 8cfdc2a · 8cfdc2a
1 parent 217cf8f
commit 8cfdc2a
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/src/api/workflows/main.go b/src/api/workflows/main.go
@@ -36,6 +36,13 @@ var WORKFLOW_VARIANT_SCHEMA WorkflowSchema = map[string]interface{}{
 					"values":   []string{"true", "false"}, // simulate boolean type
 					"default":  "false",
 				},
+				{
+					"id":		"gohan_url",
+					"type":		"string",
+					"required":	true,
+					"value":	"FROM_CONFIG",
+					"hidden":	true,
+				},
 			},
 			"outputs": []map[string]interface{}{
 				{

diff --git a/src/api/workflows/vcf_gz.wdl b/src/api/workflows/vcf_gz.wdl
@@ -1,5 +1,5 @@
 workflow vcf_gz {
-    String service_url
+    String gohan_url
     Array[File] vcf_gz_file_names
     String assembly_id
     String project_id
@@ -9,7 +9,7 @@ workflow vcf_gz {
 
     scatter(file_name in vcf_gz_file_names) {
         call vcf_gz_gohan {
-            input: gohan_url = service_url,
+            input: gohan_url = gohan_url,
                    vcf_gz_file_name = file_name,
                    assembly_id = assembly_id,
                    project = project_id,