chore: support 3.12

.github/workflows/python-package-daily.yml

@@ -5,7 +5,7 @@ name: Run tests with latest dependencies
 
 on:
   schedule:
-    - cron:  '0 6 * * *'
+    - cron: '0 6 * * *'
   workflow_dispatch:
 
 jobs:
@@ -15,7 +15,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v2

.github/workflows/python-package.yml

@@ -16,7 +16,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v2

.pre-commit-config.yaml

@@ -2,7 +2,7 @@ exclude: '^docs/conf.py'
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v3.4.0
+  rev: v5.0.0
   hooks:
   - id: trailing-whitespace
   - id: check-added-large-files
@@ -30,20 +30,20 @@ repos:
 #     ]
 
 - repo: https://github.com/pycqa/isort
-  rev: 5.12.0
+  rev: 5.13.2
   hooks:
   - id: isort
 
 - repo: https://github.com/PyCQA/flake8
-  rev: 3.9.2
+  rev: 7.0.0
   hooks:
   - id: flake8
     exclude: ^templates/
-  ## You can add flake8 plugins via `additional_dependencies`:
-  #  additional_dependencies: [flake8-bugbear]
+    additional_dependencies: [flake8-pyproject]
+    args: [--config=pyproject.toml]
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: 'v1.11.1'  # Use the sha / tag you want to point at
+  rev: 'v1.11.2'  # Use the sha / tag you want to point at
   hooks:
   - id: mypy
     exclude: ^templates/
@@ -55,7 +55,7 @@ repos:
     - types-PyYAML
     - types-tabulate
 - repo: https://github.com/asottile/add-trailing-comma
-  rev: v2.1.0
+  rev: v3.1.0
   hooks:
   - id: add-trailing-comma
 #- repo: https://github.com/asottile/reorder_python_imports
@@ -65,7 +65,7 @@ repos:
 #    args: [--application-directories=.:src]
 
 - repo: https://github.com/hadialqattan/pycln
-  rev: v2.1.2
+  rev: v2.4.0
   hooks:
   - id: pycln
     args: [--config=pyproject.toml]
@@ -82,14 +82,14 @@ repos:
     args: [--disable=use-implicit-booleaness-not-comparison]
 
 - repo: https://github.com/asottile/pyupgrade
-  rev: v3.10.1
+  rev: v3.17.0
   hooks:
     - id: pyupgrade
       args:
-        - --py38-plus
+        - --py39-plus
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.3.7
+  rev: v0.6.9
   hooks:
     - id: ruff
       args: [ --fix ]

docs/Makefile

@@ -11,7 +11,7 @@ AUTODOCDIR    = api
 
 # User-friendly check for sphinx-build
 ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $?), 1)
-$(error "The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/")
+$(error "The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from https://sphinx-doc.org/")
 endif
 
 .PHONY: help clean Makefile

docs/conf.py

@@ -9,14 +9,11 @@
 
 import os
 import sys
-import inspect
 import shutil
 
 # -- Path setup --------------------------------------------------------------
 
-__location__ = os.path.join(
-    os.getcwd(), os.path.dirname(inspect.getfile(inspect.currentframe()))
-)
+__location__ = os.path.dirname(__file__)
 
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
@@ -26,7 +23,7 @@
 # -- Run sphinx-apidoc -------------------------------------------------------
 # This hack is necessary since RTD does not issue `sphinx-apidoc` before running
 # `sphinx-build -b html . _build/html`. See Issue:
-# https://github.com/rtfd/readthedocs.org/issues/1139
+# https://github.com/readthedocs/readthedocs.org/issues/1139
 # DON'T FORGET: Check the box "Install your project inside a virtualenv using
 # setup.py install" in the RTD Advanced Settings.
 # Additionally it helps us to avoid running apidoc manually
@@ -46,10 +43,7 @@
 try:
     import sphinx
 
-    cmd_line_template = (
-        "sphinx-apidoc --implicit-namespaces -f -o {outputdir} {moduledir}"
-    )
-    cmd_line = cmd_line_template.format(outputdir=output_dir, moduledir=module_dir)
+    cmd_line = f"sphinx-apidoc --implicit-namespaces -f -o {output_dir} {module_dir}"
 
     args = cmd_line.split(" ")
     if tuple(sphinx.__version__.split(".")) >= ("1", "7"):
@@ -100,10 +94,19 @@
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
-# The short X.Y version.
-version = ""  # Is set by calling `setup.py docs`
-# The full version, including alpha/beta/rc tags.
-release = ""  # Is set by calling `setup.py docs`
+# version: The short X.Y version.
+# release: The full version, including alpha/beta/rc tags.
+# If you don’t need the separation provided between version and release,
+# just set them both to the same value.
+try:
+    from shillelagh import __version__ as version
+except ImportError:
+    version = ""
+
+if not version or version.lower() == "unknown":
+    version = os.getenv("READTHEDOCS_VERSION", "unknown")  # automatically set by RTD
+
+release = version
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
@@ -142,6 +145,9 @@
 # If true, keep warnings as "system message" paragraphs in the built documents.
 # keep_warnings = False
 
+# If this is True, todo emits a warning for each TODO entries. The default is False.
+todo_emit_warnings = True
+
 
 # -- Options for HTML output -------------------------------------------------
 
@@ -159,12 +165,7 @@
 
 # The name for this set of Sphinx documents.  If None, it defaults to
 # "<project> v<release> documentation".
-try:
-    from shillelagh import __version__ as version
-except ImportError:
-    pass
-else:
-    release = version
+# html_title = None
 
 # A shorter title for the navigation bar.  Default is the same as html_title.
 # html_short_title = None
@@ -268,12 +269,15 @@
 # -- External mapping --------------------------------------------------------
 python_version = ".".join(map(str, sys.version_info[0:2]))
 intersphinx_mapping = {
-    "sphinx": ("http://www.sphinx-doc.org/en/stable", None),
+    "sphinx": ("https://www.sphinx-doc.org/en/master", None),
     "python": ("https://docs.python.org/" + python_version, None),
     "matplotlib": ("https://matplotlib.org", None),
-    "numpy": ("https://docs.scipy.org/doc/numpy", None),
+    "numpy": ("https://numpy.org/doc/stable", None),
     "sklearn": ("https://scikit-learn.org/stable", None),
     "pandas": ("https://pandas.pydata.org/pandas-docs/stable", None),
     "scipy": ("https://docs.scipy.org/doc/scipy/reference", None),
+    "setuptools": ("https://setuptools.pypa.io/en/stable/", None),
     "pyscaffold": ("https://pyscaffold.org/en/stable", None),
 }
+
+print(f"loading configurations for {project} {version} ...", file=sys.stderr)

pyproject.toml

@@ -1,6 +1,6 @@
 [build-system]
 # AVOID CHANGING REQUIRES: IT WILL BE UPDATED BY PYSCAFFOLD!
-requires = ["setuptools>=46.1.0,<50", "setuptools_scm[toml]>=5", "wheel"]
+requires = ["setuptools>=46.1.0", "setuptools_scm[toml]>=5", "wheel"]
 build-backend = "setuptools.build_meta"
 
 [tool.setuptools_scm]
@@ -9,8 +9,10 @@ version_scheme = "no-guess-dev"
 
 [tool.flake8]
 max-line-length = 90
+extend-ignore = ["E203", "E501"]
 
 [tool.ruff]
-exclude = [
-    "templates",
-]
+exclude = ["templates"]
+
+[tool.black]
+line-length = 90

requirements/base.txt

@@ -7,54 +7,54 @@
 #
 -e file:.
     # via -r requirements/base.in
-apsw==3.45.3.0
+apsw==3.46.1.0
     # via shillelagh
-attrs==23.1.0
+attrs==24.2.0
     # via
     #   cattrs
     #   requests-cache
-cattrs==23.1.2
+cattrs==24.1.2
     # via requests-cache
-certifi==2022.6.15
+certifi==2024.8.30
     # via requests
-charset-normalizer==2.1.0
+charset-normalizer==3.3.2
     # via requests
-exceptiongroup==1.1.3
+exceptiongroup==1.2.2
     # via cattrs
-greenlet==2.0.2
-    # via
-    #   shillelagh
-    #   sqlalchemy
-idna==3.3
+greenlet==3.1.1
+    # via shillelagh
+idna==3.10
     # via requests
+importlib-metadata==8.5.0
+    # via shillelagh
 packaging==24.1
     # via shillelagh
-platformdirs==3.11.0
+platformdirs==4.3.6
     # via requests-cache
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via shillelagh
-requests==2.31.0
+requests==2.32.3
     # via
     #   requests-cache
     #   shillelagh
-requests-cache==1.1.0
+requests-cache==1.2.1
     # via shillelagh
 six==1.16.0
     # via
     #   python-dateutil
     #   url-normalize
-sqlalchemy==1.4.39
-    # via shillelagh
-typing-extensions==4.3.0
+sqlalchemy==2.0.35
     # via shillelagh
+typing-extensions==4.12.2
     # via
     #   cattrs
     #   shillelagh
+    #   sqlalchemy
 url-normalize==1.4.3
     # via requests-cache
-urllib3==1.26.10
+urllib3==2.2.3
     # via
     #   requests
     #   requests-cache
-zipp==3.15.0
+zipp==3.20.2
     # via importlib-metadata