Membrane Protein Classification: a Reproducibility Study

In this project, we tried to reproduce the SVM-based model from the TrSSP paper, for "Prediction of Membrane Transport Proteins and Their Substrate Specificities" using python3, Scikit-Learn, Numpy, Pandas and Matplotlib (Version information is available in requirements.txt).

Run this Notebook for the pipeline details and results.

Reference

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information Nitish K. Mishra,Junil Chang,Patrick X. Zhao (2014)