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Minor changes including docs and nextflow configs #1083

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Minor changes including docs and nextflow configs

Minor changes including docs and nextflow configs #1083

Run time

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Job Run time
Run pipeline with test data (23.04.0, test_lfq, docker)
10m 27s
Run pipeline with test data (23.04.0, test_lfq, docker)
10m 27s
Run pipeline with test data (23.04.0, test_lfq_sage, docker)
9m 19s
Run pipeline with test data (23.04.0, test_lfq_sage, docker)
9m 19s
Run pipeline with test data (23.04.0, test_dia, docker)
43m 46s
Run pipeline with test data (23.04.0, test_dia, docker)
1h 2m 27s
Run pipeline with test data (23.04.0, test_localize, docker)
18m 47s
Run pipeline with test data (23.04.0, test_localize, docker)
18m 47s
Run pipeline with test data (23.04.0, test_tmt, docker)
12m 6s
Run pipeline with test data (23.04.0, test_tmt, docker)
12m 6s
Run pipeline with test data (23.04.0, test_dda_id, docker)
17m 27s
Run pipeline with test data (23.04.0, test_dda_id, docker)
17m 27s
Run pipeline with test data (latest-everything, test_lfq, docker)
10m 32s
Run pipeline with test data (latest-everything, test_lfq, docker)
10m 32s
Run pipeline with test data (latest-everything, test_lfq_sage, docker)
11m 36s
Run pipeline with test data (latest-everything, test_lfq_sage, docker)
11m 36s
Run pipeline with test data (latest-everything, test_dia, docker)
55m 46s
Run pipeline with test data (latest-everything, test_dia, docker)
55m 46s
Run pipeline with test data (latest-everything, test_localize, docker)
12m 52s
Run pipeline with test data (latest-everything, test_localize, docker)
12m 52s
Run pipeline with test data (latest-everything, test_tmt, docker)
13m 50s
Run pipeline with test data (latest-everything, test_tmt, docker)
13m 50s
Run pipeline with test data (latest-everything, test_dda_id, docker)
14m 2s
Run pipeline with test data (latest-everything, test_dda_id, docker)
14m 2s
Run pipeline with test data (test_latest_dia, singularity)
1h 0m 35s
Run pipeline with test data (test_latest_dia, singularity)
1h 0m 35s
Run pipeline with test data (test_lfq, conda)
13m 16s
Run pipeline with test data (test_lfq, conda)
13m 16s
Run pipeline with test data (test_dda_id, conda)
17m 0s
Run pipeline with test data (test_dda_id, conda)
17m 0s
11h 1m 23s