update template 3.0.2 - versions issues

bigbio · Oct 19, 2024 · b2875d2 · b2875d2
1 parent f42e31d
commit b2875d2
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Showing 2 changed files with 10 additions and 7 deletions.
diff --git a/conf/base.config b/conf/base.config
@@ -29,12 +29,12 @@ process {
 
     withLabel:process_single {
         cpus   = { 1                   }
-        memory = { 4.GB * task.attempt }
+        memory = { 6.GB * task.attempt }
         time   = { 4.h  * task.attempt }
     }
     withLabel:process_low {
         cpus   = { 4     * task.attempt }
-        memory = { 8.GB * task.attempt }
+        memory = { 12.GB * task.attempt }
         time   = { 6.h   * task.attempt }
     }
     withLabel:process_very_low {

diff --git a/conf/test_lfq.config b/conf/test_lfq.config
@@ -10,15 +10,18 @@
 ------------------------------------------------------------------------------------------------
 */
 
+process {
+    resourceLimits = [
+        cpus: 4,
+        memory: '12.GB',
+        time: '48.h'
+    ]
+}
+
 params {
     config_profile_name        = 'Test profile for DDA LFQ'
     config_profile_description = 'Minimal test dataset to check pipeline function of the label-free quantification branch of the pipeline'
 
-    // Limit resources so that this can run on GitHub Actions
-    max_cpus = 2
-    max_memory = 6.GB
-    max_time = 48.h
-
     outdir = "./results_lfq"
 
     // Input data