Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update to openms 3.2.0 #423

Merged
merged 52 commits into from
Oct 7, 2024
Merged
Changes from 1 commit
Commits
Show all changes
52 commits
Select commit Hold shift + click to select a range
f8fa8e3
quantms-utils 0.0.10 -> 0.0.11
ypriverol Sep 10, 2024
0c0c811
Merge branch 'dev' of https://github.com/bigbio/quantms into dev
ypriverol Sep 10, 2024
195beaa
Merge branch 'master' of https://github.com/bigbio/quantms into dev
ypriverol Sep 10, 2024
9e42ec8
actions/upload-artifact@v1 -> v2
ypriverol Sep 10, 2024
95b1cff
actions/upload-artifact@v2 -> v4
ypriverol Sep 10, 2024
1b373be
actions/upload-artifact@v2 -> v4
ypriverol Sep 10, 2024
912a545
actions/upload-artifact@v2 -> v4
ypriverol Sep 10, 2024
a426e07
actions/upload-artifact@v2 -> v4
ypriverol Sep 10, 2024
b03e080
Merge pull request #39 from bigbio/dev
daichengxin Sep 11, 2024
19450e3
Merge pull request #419 from ypriverol/dev
ypriverol Sep 11, 2024
c78f16c
Merge pull request #40 from bigbio/dev
daichengxin Sep 19, 2024
86c352c
Update main.nf
daichengxin Sep 19, 2024
9373df5
Update main.nf
daichengxin Sep 19, 2024
5e685df
Update main.nf
daichengxin Sep 19, 2024
7734f96
Merge pull request #420 from daichengxin/dev
ypriverol Sep 19, 2024
7d81745
openms 3.1.0 -> 3.2.0
ypriverol Oct 2, 2024
a8f1d69
score:pep -> score:psm change in OpenMS 3.2.0
ypriverol Oct 2, 2024
6935c24
overrite github actions
ypriverol Oct 2, 2024
7031000
disable isotopic correction.
ypriverol Oct 3, 2024
8fc5f08
disable isotopic correction.
ypriverol Oct 3, 2024
a078398
disable isotopic correction.
ypriverol Oct 3, 2024
76cd7f0
disable isotopic correction.
ypriverol Oct 3, 2024
bf6a143
disable isotopic correction.
ypriverol Oct 3, 2024
f1210fc
first default matrix provided
ypriverol Oct 4, 2024
9cb718d
first attempt to pass correction matrices
ypriverol Oct 4, 2024
10fa349
first attempt to pass correction matrices
ypriverol Oct 4, 2024
b17b33c
first attempt to pass correction matrices
ypriverol Oct 4, 2024
7e9cd11
small bug
ypriverol Oct 4, 2024
c5005f1
added plex6tmt from MSnbase
ypriverol Oct 4, 2024
e0ede9e
added test correction tmtplex
ypriverol Oct 4, 2024
db3c7f7
added test correction tmtplex
ypriverol Oct 4, 2024
1e5794f
added test correction tmtplex
ypriverol Oct 4, 2024
dbf7cd5
added test correction tmtplex
ypriverol Oct 4, 2024
d1d8820
added test correction tmtplex
ypriverol Oct 4, 2024
6f87597
added test correction tmtplex
ypriverol Oct 5, 2024
b1c433e
metro updated
ypriverol Oct 5, 2024
2f08ab4
corr matrix
ypriverol Oct 5, 2024
d304266
improve github actions
ypriverol Oct 5, 2024
6401b09
improve github actions
ypriverol Oct 5, 2024
f0dbbe3
improve github actions
ypriverol Oct 5, 2024
695d434
improve github actions
ypriverol Oct 5, 2024
4c2b3e1
tmt11plex matrix added.
ypriverol Oct 6, 2024
b13a7cb
itraq4 and itraq8 matrix added.
ypriverol Oct 6, 2024
8cab24a
refactoring in the default table
ypriverol Oct 6, 2024
a63cc85
temporary check
ypriverol Oct 7, 2024
fe9c4f7
temporary check
ypriverol Oct 7, 2024
dc766ed
temporary check
ypriverol Oct 7, 2024
f3c93ff
temporary check
ypriverol Oct 7, 2024
2586acc
Update ci.yml
jpfeuffer Oct 7, 2024
1dc3e6d
Merge branch 'dev' of https://github.com/ypriverol/quantms into dev
ypriverol Oct 7, 2024
87e2129
testing include-hidden-files
ypriverol Oct 7, 2024
9d47118
testing include-hidden-files
ypriverol Oct 7, 2024
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 3 additions & 0 deletions .github/workflows/ci.yml
ypriverol marked this conversation as resolved.
Show resolved Hide resolved
Original file line number Diff line number Diff line change
Expand Up @@ -111,15 +111,18 @@ jobs:
with:
name: failed_logs_${{ env.TEST_PROFILE }}_${{ env.EXEC_PROFILE }}_${{ github.run_id }}
path: failed_logs
overwrite: true
- uses: actions/upload-artifact@v4
if: always()
name: Upload results
with:
name: ${{ env.TEST_PROFILE }}_${{ env.EXEC_PROFILE }}_${{ github.run_id }}_results
path: ${{ env.TEST_PROFILE }}_${{ env.EXEC_PROFILE }}_results
overwrite: true
- uses: actions/upload-artifact@v4
if: always()
name: Upload log
with:
name: nextflow_${{ env.TEST_PROFILE }}_${{ env.EXEC_PROFILE }}_${{ github.run_id }}.log
path: .nextflow.log
overwrite: true
Loading