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Improving configs for OpenMS dev and DIANN versions over 1.8.1 #441

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Nov 23, 2024
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4085296
remove big-nodes.config
ypriverol Nov 17, 2024
db259e8
move diann 1.9.1beta to config
ypriverol Nov 17, 2024
78d35e9
quantms-utils 0.0.11 -> 0.0.12
ypriverol Nov 17, 2024
d9f9fe2
remove diann version
ypriverol Nov 18, 2024
6e4ef56
pride slurm added
ypriverol Nov 18, 2024
4b4aff0
pride slurm added
ypriverol Nov 18, 2024
26eb83f
diann 1.9.1dev -> 1.9.2
ypriverol Nov 18, 2024
a814355
diann 1.9.1dev -> 1.9.2
ypriverol Nov 18, 2024
a0bad9e
diann 1.9.1dev -> 1.9.2
ypriverol Nov 18, 2024
2c2380a
private containers login
ypriverol Nov 18, 2024
7ea1f4c
private containers login
ypriverol Nov 18, 2024
4512b41
private containers login
ypriverol Nov 18, 2024
70ce58e
private containers login
ypriverol Nov 18, 2024
2c1829c
private containers login
ypriverol Nov 18, 2024
5d77377
private containers login
ypriverol Nov 18, 2024
a626a2a
private containers login
ypriverol Nov 18, 2024
c328512
add diann_private.yml
ypriverol Nov 18, 2024
82c6318
add diann_private.yml
ypriverol Nov 18, 2024
3f2dce5
add diann_private.yml
ypriverol Nov 18, 2024
d50c0f3
Merge pull request #46 from bigbio/dev
daichengxin Nov 19, 2024
2cdd220
Merge pull request #47 from ypriverol/dev
daichengxin Nov 19, 2024
9e0487a
compatible with different formats
daichengxin Nov 19, 2024
4c6a8cf
Merge pull request #2 from daichengxin/dev
ypriverol Nov 21, 2024
440a182
quantms-utils 0.0.12 -> 0.0.13
ypriverol Nov 21, 2024
df037e2
quantms-utils 0.0.13 -> 0.0.14
ypriverol Nov 22, 2024
effa1ba
quantms-utils 0.0.12 -> 0.0.15
ypriverol Nov 21, 2024
6485495
Merge remote-tracking branch 'origin/dev' into dev
ypriverol Nov 23, 2024
c663c2f
quantms-utils 0.0.14 -> 0.0.15
ypriverol Nov 23, 2024
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2 changes: 1 addition & 1 deletion conf/dev.config
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ params {

process {
withLabel: openms {
conda = "openms::openms-thirdparty=3.2.0"
conda = "bioconda::openms-thirdparty=3.2.0" // The conda package is not the nightly version
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container = {"${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'ghcr.io/openms/openms-executables-sif:latest' : 'ghcr.io/openms/openms-executables:latest' }"}
}
}
1 change: 1 addition & 0 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -406,6 +406,7 @@ profiles {
test_full { includeConfig 'conf/test_full_lfq.config' }
test_dda_id { includeConfig 'conf/test_dda_id.config' }
mambaci { includeConfig 'conf/mambaci.config' }
dev { includeConfig 'conf/dev.config' }
}

// Load nf-core custom profiles from different Institutions
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