fix some setup issues (#16)

bihealth · Jan 31, 2023 · d7112bb · d7112bb
1 parent b93cebf
commit d7112bb
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diff --git a/docker/Dockerfile b/docker/Dockerfile
@@ -57,6 +57,9 @@ RUN apt-get install -y python python-pip python-dev python3-distro sudo vim wget
 # Install database dependencies
 RUN apt-get install -y unixodbc unixodbc-dev odbc-postgresql
 
+# Install iRODS Python dependencies
+RUN pip install pyodbc
+
 # Install iRODS
 RUN wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add - \
   && echo "deb [arch=amd64] https://packages.irods.org/apt/ $(lsb_release -sc) main" | sudo tee /etc/apt/sources.list.d/renci-irods.list \

diff --git a/docker/docker-entrypoint.sh b/docker/docker-entrypoint.sh
@@ -50,7 +50,7 @@ if [[ "$1" == "irods-start" ]]; then
         j2 -o /unattended_config.json --undefined --filters=j2-filters.py unattended_config.json.j2
 
         echo "Perform iRODS setup"
-        python /var/lib/irods/scripts/setup_irods.py --json_configuration_file=/unattended_config.json
+        python3 /var/lib/irods/scripts/setup_irods.py --json_configuration_file=/unattended_config.json
 
         cp /var/lib/irods/.irods/irods_environment.json /etc/irods/irods_environment.json
         cp /var/lib/irods/.odbc.ini /etc/irods/.odbc.ini