Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

docs: adjust annonars clinvar data versions to use v0.25.0 #26

Merged
merged 1 commit into from
Nov 20, 2023
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
24 changes: 12 additions & 12 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -269,30 +269,30 @@ To obtain ClinVar, use the following.
Note that this will install the data from November 12, 2023 and you might want to [look here for the latest release](https://github.com/bihealth/annonars-data-clinvar/releases).

```bash session
wget -O /tmp/annonars-clinvar-minimal-grch37-20231112+0.24.5.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-minimal-grch37-20231112+0.24.5.tar.gz
wget -O /tmp/annonars-clinvar-minimal-grch38-20231112+0.24.5.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-minimal-grch38-20231112+0.24.5.tar.gz
wget -O /tmp/annonars-clinvar-minimal-grch37-20231112+0.25.0.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-minimal-grch37-20231112+0.25.0.tar.gz
wget -O /tmp/annonars-clinvar-minimal-grch38-20231112+0.25.0.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-minimal-grch38-20231112+0.25.0.tar.gz

tar -C .dev/volumes/reev-static/data/download/annonars/ \
-xf /tmp/annonars-clinvar-minimal-grch37-20231112+0.24.5.tar.gz
-xf /tmp/annonars-clinvar-minimal-grch37-20231112+0.25.0.tar.gz
tar -C .dev/volumes/reev-static/data/download/annonars \
-xf /tmp/annonars-clinvar-minimal-grch38-20231112+0.24.5.tar.gz
-xf /tmp/annonars-clinvar-minimal-grch38-20231112+0.25.0.tar.gz

rm -f .dev/volumes/reev-static/data/annonars/grch37/clinvar
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch37-20231112+0.24.5 \
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch37-20231112+0.25.0 \
.dev/volumes/reev-static/data/annonars/grch37/clinvar
rm -f .dev/volumes/reev-static/data/annonars/grch38/clinvar
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch38-20231112+0.24.5 \
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch38-20231112+0.25.0 \
.dev/volumes/reev-static/data/annonars/grch38/clinvar

wget -O /tmp/annonars-clinvar-genes-20231112+0.24.5.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-genes-20231112+0.24.5.tar.gz
wget -O /tmp/annonars-clinvar-genes-20231112+0.25.0.tar.gz \
https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231112/annonars-clinvar-genes-20231112+0.25.0.tar.gz
tar -C .dev/volumes/reev-static/data/download/annonars \
-xf /tmp/annonars-clinvar-genes-20231112+0.24.5.tar.gz
-xf /tmp/annonars-clinvar-genes-20231112+0.25.0.tar.gz

rm -f .dev/volumes/reev-static/data/annonars/clinvar-genes
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-genes-20231112+0.24.5 \
ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-genes-20231112+0.25.0 \
.dev/volumes/reev-static/data/annonars/clinvar-genes
```

Expand Down
Loading