feat: Add documentation for AutoACMG microservice in reev-docker-compose (#803)
#1481
Triggered via pull request
September 20, 2024 15:47
gromdimon
Status
Failure
Total duration
2m 27s
Artifacts
–
main.yml
on: pull_request
Backend-Test
1m 0s
Frontend-Test
1m 15s
Annotations
9 errors and 2 warnings
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Backend-Test
Process completed with exit code 2.
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should have correct default values:
frontend/src/lib/acmgSeqvar.spec.ts#L20
AssertionError: expected 5 to deeply equal 4
- Expected
+ Received
- 4
+ 5
❯ src/lib/acmgSeqvar.spec.ts:20:66
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should correctly get criteria state from interVar:
frontend/src/lib/acmgSeqvar.spec.ts#L68
AssertionError: expected { criteria: 'PVS1', …(3) } to strictly equal { criteria: 'PVS1', …(2) }
- Expected
+ Received
Object {
"criteria": "PVS1",
"evidenceLevel": "Pathogenic Very Strong",
"presence": "Present",
+ "summary": undefined,
}
❯ src/lib/acmgSeqvar.spec.ts:68:67
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should correctly get criteria state from server:
frontend/src/lib/acmgSeqvar.spec.ts#L84
AssertionError: expected { criteria: 'PVS1', …(3) } to strictly equal { criteria: 'PVS1', …(2) }
- Expected
+ Received
Object {
"criteria": "PVS1",
"evidenceLevel": "Pathogenic Very Strong",
"presence": "Present",
+ "summary": undefined,
}
❯ src/lib/acmgSeqvar.spec.ts:84:67
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should correctly get criteria state from server and InterVar:
frontend/src/lib/acmgSeqvar.spec.ts#L101
AssertionError: expected { criteria: 'PVS1', …(3) } to strictly equal { criteria: 'PVS1', …(2) }
- Expected
+ Received
Object {
"criteria": "PVS1",
"evidenceLevel": "Pathogenic Very Strong",
"presence": "Absent",
+ "summary": undefined,
}
❯ src/lib/acmgSeqvar.spec.ts:101:67
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should correctly get criteria state with invalid request:
frontend/src/lib/acmgSeqvar.spec.ts#L116
AssertionError: expected { criteria: 'invalid', …(3) } to strictly equal { criteria: 'invalid', …(2) }
- Expected
+ Received
Object {
"criteria": "invalid",
"evidenceLevel": "Not Set",
"presence": "Unknown",
+ "summary": undefined,
}
❯ src/lib/acmgSeqvar.spec.ts:116:75
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src/lib/acmgSeqvar.spec.ts > MultiSourceAcmgCriteriaState > should correctly get States:
frontend/src/lib/acmgSeqvar.spec.ts#L429
AssertionError: expected 5 to deeply equal 4
- Expected
+ Received
- 4
+ 5
❯ src/lib/acmgSeqvar.spec.ts:429:48
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src/stores/seqvarAcmgRating/store.spec.ts > geneInfo Store > should not load data if small variant is the same:
frontend/src/stores/seqvarAcmgRating/store.spec.ts#L203
AssertionError: expected 3 to be 2 // Object.is equality
- Expected
+ Received
- 2
+ 3
❯ src/stores/seqvarAcmgRating/store.spec.ts:203:43
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Frontend-Test
Process completed with exit code 2.
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Cancel-Previous
The following actions uses node12 which is deprecated and will be forced to run on node16: khan/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Cancel-Previous
The following actions use a deprecated Node.js version and will be forced to run on node20: khan/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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