fix: Different fixes for AutoACMG in REEV #1495
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| Cancel-Previous: | |
| runs-on: ubuntu-latest | |
| if: github.ref != 'refs/heads/main' | |
| steps: | |
| - uses: khan/[email protected] | |
| with: | |
| workflows: "python.yml" | |
| env: | |
| GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}' | |
| Backend-Lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| cache: "pipenv" | |
| cache-dependency-path: | | |
| backend/Pipfile.lock | |
| - name: Install pipenv and deps | |
| run: | | |
| python -m pip install --upgrade pipenv wheel | |
| make -C backend deps | |
| - name: Lint source code | |
| run: make -C backend lint | |
| Backend-Test: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Backend-Lint | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| cache: "pipenv" | |
| cache-dependency-path: | | |
| backend/Pipfile.lock | |
| - name: Install pipenv and deps | |
| run: | | |
| python -m pip install --upgrade pipenv wheel | |
| make -C backend deps | |
| - name: Install dependencies | |
| run: make -C backend deps | |
| - name: Run tests | |
| run: make -C backend test | |
| - name: Build docs | |
| run: make -C backend docs | |
| - name: Upload backend coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: backend | |
| directory: backend | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| Frontend-Lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| submodules: recursive | |
| - name: Set up node 20.x | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: "20.x" | |
| cache: "npm" | |
| cache-dependency-path: | | |
| frontend/package-lock.json | |
| - name: Install deps | |
| run: make -C frontend deps | |
| - name: Lint source code | |
| run: make -C frontend lint | |
| Frontend-Test: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Frontend-Lint | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| submodules: recursive | |
| - name: Set up node 20.x | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: "20.x" | |
| cache: "npm" | |
| cache-dependency-path: | | |
| frontend/package-lock.json | |
| - name: Install dependencies | |
| run: make -C frontend deps | |
| - name: Run tests | |
| run: make -C frontend test-ci | |
| - name: Upload frontend coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: frontend | |
| directory: frontend | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |