Merge pull request #115 from bioimage-io/pretty_status #254
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: test backoffice and build docs | |
| on: push | |
| concurrency: | |
| group: test | |
| cancel-in-progress: true | |
| jobs: | |
| initial-cleanup: | |
| environment: testing | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" # caching pip dependencies | |
| - run: pip install . | |
| - run: backoffice wipe | |
| env: | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_BUCKET}} | |
| S3_FOLDER: ${{vars.S3_FOLDER}} | |
| S3_ACCESS_KEY_ID: ${{secrets.S3_ACCESS_KEY_ID}} | |
| S3_SECRET_ACCESS_KEY: ${{secrets.S3_SECRET_ACCESS_KEY}} | |
| RUN_URL: ${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}} | |
| BIOIMAGEIO_USER_ID: github|${{github.actor_id}} | |
| generate-initial-collection-json: | |
| needs: initial-cleanup | |
| uses: bioimage-io/collection/.github/workflows/generate_collection_json_call.yaml@main | |
| with: | |
| environment_name: testing | |
| secrets: inherit | |
| test-stage: | |
| needs: generate-initial-collection-json | |
| uses: bioimage-io/collection/.github/workflows/stage_call.yaml@main | |
| with: | |
| concept_id: 'frank-water-buffalo' | |
| package_url: 'https://uk1s3.embassy.ebi.ac.uk/public-datasets/examples.bioimage.io/frank-water-buffalo_v1.zip' | |
| environment_name: testing | |
| secrets: inherit | |
| test-publish: | |
| needs: test-stage | |
| uses: bioimage-io/collection/.github/workflows/publish_call.yaml@main | |
| with: | |
| concept_id: 'frank-water-buffalo' | |
| reviewer: 'github|${{github.actor_id}}' | |
| environment_name: testing | |
| secrets: inherit | |
| test-generate-collection-json: | |
| needs: test-publish | |
| uses: bioimage-io/collection/.github/workflows/generate_collection_json_call.yaml@main | |
| with: | |
| environment_name: testing | |
| secrets: inherit | |
| test-generate-collection-staged-json: | |
| needs: test-publish | |
| uses: bioimage-io/collection/.github/workflows/generate_collection_json_call.yaml@main | |
| with: | |
| mode: 'staged' | |
| environment_name: testing | |
| secrets: inherit | |
| test-backup: | |
| needs: test-generate-collection-json | |
| uses: bioimage-io/collection/.github/workflows/backup_call.yaml@main | |
| with: | |
| environment_name: testing | |
| secrets: inherit | |
| build: | |
| runs-on: ubuntu-latest | |
| environment: testing | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" # caching pip dependencies | |
| - run: pip install -e .[dev] | |
| - run: black . --check | |
| - run: pyright -p pyproject.toml | |
| - run: pytest | |
| env: | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_BUCKET}} | |
| S3_FOLDER: ${{vars.S3_FOLDER}} | |
| S3_ACCESS_KEY_ID: ${{secrets.S3_ACCESS_KEY_ID}} | |
| S3_SECRET_ACCESS_KEY: ${{secrets.S3_SECRET_ACCESS_KEY}} | |
| RUN_URL: ${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}} | |
| ZENODO_URL: ${{vars.ZENODO_URL}} | |
| ZENODO_API_ACCESS_TOKEN: ${{secrets.ZENODO_API_ACCESS_TOKEN}} | |
| BIOIMAGEIO_USER_ID: github|${{github.actor_id}} | |
| - name: export documentation | |
| run: | | |
| pdoc \ | |
| --mermaid \ | |
| --docformat google \ | |
| --logo https://bioimage.io/static/img/bioimage-io-logo.svg \ | |
| --logo-link https://bioimage.io/ \ | |
| --favicon https://bioimage.io/static/img/bioimage-io-icon-small.svg \ | |
| --footer-text 'bioimageio_collection_backoffice' \ | |
| -o ./docs bioimageio_collection_backoffice | |
| - name: Deploy to gh-pages 🚀 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: docs |