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Replace hegroup sparql endpoint URL with rdf.geneontology.org/sparql #691

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merged 2 commits into from
Sep 6, 2024
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Replace hegroup sparql endpoint URL with rdf.geneontology.org/sparql #691

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94b6875
replace instances of hegroup sparql endpoint with rdf.geneontology.or…
sierra-moxon Sep 6, 2024
227606c
replace instances of hegroup with rdf.geneontology.org
sierra-moxon Sep 6, 2024
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2 changes: 1 addition & 1 deletion ontobio/config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ amigo_solr_search:
url: "http://golr.geneontology.org/solr"
timeout: 15
sparql:
url: "http://sparql.hegroup.org/sparql"
url: "http://rdf.geneontology.org/sparql"
timeout: 30
scigraph_ontology:
url: "https://scigraph-ontology.monarchinitiative.org/scigraph/"
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2 changes: 0 additions & 2 deletions ontobio/sparql/sparql_ontol_utils.py
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Expand Up @@ -38,7 +38,6 @@

class EOntology(Enum):
GO = "http://rdf.geneontology.org/sparql"
HEGROUP = "http://sparql.hegroup.org/sparql"
UNIPROT = "https://sparql.uniprot.org/sparql/"

class EDocState(Enum):
Expand All @@ -51,7 +50,6 @@ class EDocState(Enum):
# for now we assume ontobee
ontol_sources = {
'go': "http://rdf.geneontology.org/sparql",
'': "http://sparql.hegroup.org/sparql"
}

OIO_SYNS = dict(
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5 changes: 3 additions & 2 deletions pyproject.toml
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@@ -1,9 +1,10 @@
[tool.poetry]
name = "ontobio"
version = "0.0.0"
version = "2.9.8"
description = ""
authors = ["Gene Ontology Consortium <[email protected]>"]
readme = "README.rst"
license = "BSD"

packages = [
{ include = "bin" },
Expand Down Expand Up @@ -51,6 +52,6 @@ requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"]
build-backend = "poetry_dynamic_versioning.backend"

[tool.poetry-dynamic-versioning]
enable = true
enable = false
vcs = "git"
style = "pep440"
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