Add CURIE ID query support (mygene support) #78
Workflow file for this run
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| name: Tests | |
| on: | |
| push: {} | |
| workflow_dispatch: {} | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| build_package_and_run_tests: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ "3.6", "3.7", "3.8", "3.9", "3.10", "3.11" ] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| run: pip install --upgrade pip | |
| - name: Install Package Dependencies | |
| run: pip install . | |
| if: (matrix.python-version != 2.7) && (matrix.python-version != 3.6) | |
| - name: Install Dependencies mannually for Py2.7 or Py3.6 | |
| run: pip install requests | |
| if: (matrix.python-version == 2.7) || (matrix.python-version == 3.6) | |
| - name: Install coverage | |
| run: pip install coverage | |
| if: matrix.python-version == 3.10 | |
| - name: Run Tests with coverage | |
| # only need to run coverage once on selected Python version | |
| run: coverage run --source . -m unittest tests/*.py | |
| if: matrix.python-version == 3.10 | |
| - name: Coverage report | |
| run: | | |
| coverage report -m | |
| # generate coverage.xml output | |
| coverage xml | |
| # upload coverage to codacy | |
| bash <(curl -Ls https://coverage.codacy.com/get.sh) report -r coverage.xml | |
| env: | |
| CODACY_PROJECT_TOKEN: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| if: matrix.python-version == 3.10 | |
| - name: Run Tests | |
| run: python -m unittest tests/*.py | |
| if: (matrix.python-version != 2.7) && (matrix.python-version != 3.6) && (matrix.python-version != 3.10) | |
| - name: Run Tests | |
| # since we cannot install packages in Py<3.7, we will use biothings_client | |
| # directly from the current working directory | |
| # `python -m unittest tests/*.py` does not work in Py2.7, so we run tests differently below | |
| run: PYTHONPATH=. python tests/test.py | |
| if: (matrix.python-version == 2.7) || (matrix.python-version == 3.6) |