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Add CURIE ID query support (mygene support) #33

Merged
merged 14 commits into from
May 29, 2024
Merged

Add CURIE ID query support (mygene support) #33

merged 14 commits into from
May 29, 2024

Commits on Feb 5, 2024

  1. Add the biolink prefix mapping to the settings ... 

    Also separate the settings into a separate file for isolating the
configuration from client construction methods
    Johnathan Schaff committed Feb 5, 2024
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Commits on Feb 6, 2024

  1. Add work for supporting CURIE query support ... 

    Specifically targets _getannotation and _getannotations methods at the
moment and only for the mygene instance
    Johnathan Schaff committed Feb 6, 2024
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  2. Update the tox configuration to use more modern python

    Johnathan Schaff committed Feb 6, 2024
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  3. Change the default value for the prefix mapping

    Johnathan Schaff committed Feb 6, 2024
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  4. Add proper list formatting for the fields support

    Johnathan Schaff committed Feb 6, 2024
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  5. Add proper multiple id/query argument handling

    Johnathan Schaff committed Feb 6, 2024
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  6. Add expectedFailure decorators to the chem tests

    Johnathan Schaff committed Feb 6, 2024
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  7. Remove the default the regex pattern matching ... 

    Not all of the different sites will work with that. Ran into issues
with that default pattern with myvariant. Instead we should view this
feature as specifically targetting support for the biolink prefixes
and nothing else
    Johnathan Schaff committed Feb 6, 2024
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  8. Remove client side CURIE support ... 

    Pivot to adding testing and verification that the API / server side
implementation supports the CURIE ID
    Johnathan Schaff committed Feb 6, 2024
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Commits on Feb 8, 2024

  1. Add the CURIE ID query testing for the mygene instance

    Johnathan Schaff committed Feb 8, 2024
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  2. Remove unused pytest import

    Johnathan Schaff committed Feb 8, 2024
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Commits on Feb 29, 2024

  1. Re-add the comma splitting to _getannotations

    Johnathan Schaff committed Feb 29, 2024
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  2. Revert the base changes master branch

    Johnathan Schaff committed Feb 29, 2024
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  3. Revert the chem tests to master branch

    Johnathan Schaff committed Feb 29, 2024
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