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<head>
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<title>Overview: module code &#8212; Odes 3.1.0+2.g27f9a83 documentation</title>
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<title>Overview: module code &#8212; Odes 3.1.0+16.gea608d8 documentation</title>
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36 changes: 18 additions & 18 deletions master/_modules/scikits_odes/dae.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>scikits_odes.dae &#8212; Odes 3.1.0+2.g27f9a83 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
<title>scikits_odes.dae &#8212; Odes 3.1.0+16.gea608d8 documentation</title>
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Expand Down Expand Up @@ -60,10 +60,10 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>
<span class="sd">&quot;&quot;&quot;</span>
<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;dae&#39;</span><span class="p">]</span>
<span class="n">__docformat__</span> <span class="o">=</span> <span class="s2">&quot;restructuredtext en&quot;</span>
<span class="kn">import</span> <span class="nn">re</span>
<span class="kn">import</span> <span class="nn">sys</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">re</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>

<span class="kn">from</span> <span class="nn">scikits_odes_core</span> <span class="kn">import</span> <span class="n">DaeBase</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">scikits_odes_core</span><span class="w"> </span><span class="kn">import</span> <span class="n">DaeBase</span>


<span class="c1">#------------------------------------------------------------------------------</span>
Expand All @@ -72,7 +72,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<div class="viewcode-block" id="dae">
<a class="viewcode-back" href="../../dae.html#scikits_odes.dae.dae">[docs]</a>
<span class="k">class</span> <span class="nc">dae</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
<span class="k">class</span><span class="w"> </span><span class="nc">dae</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> A generic interface class to differential algebraic equations.</span>

Expand Down Expand Up @@ -150,7 +150,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<span class="n">LOADED</span> <span class="o">=</span> <span class="kc">False</span>

<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">integrator_name</span><span class="p">,</span> <span class="n">eqsres</span><span class="p">,</span> <span class="o">**</span><span class="n">options</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">integrator_name</span><span class="p">,</span> <span class="n">eqsres</span><span class="p">,</span> <span class="o">**</span><span class="n">options</span><span class="p">):</span>
<span class="n">integrator</span> <span class="o">=</span> <span class="n">find_dae_integrator</span><span class="p">(</span><span class="n">integrator_name</span><span class="p">)</span>
<span class="k">if</span> <span class="n">integrator</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;No integrator name match with </span><span class="si">%s</span><span class="s1"> or is not available.&#39;</span>\
Expand All @@ -160,7 +160,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<div class="viewcode-block" id="dae.set_options">
<a class="viewcode-back" href="../../dae.html#scikits_odes.dae.dae.set_options">[docs]</a>
<span class="k">def</span> <span class="nf">set_options</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">options</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">set_options</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">options</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Set specific options for the solver.</span>
<span class="sd"> See the solver documentation for details.</span>
Expand All @@ -172,7 +172,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<div class="viewcode-block" id="dae.solve">
<a class="viewcode-back" href="../../dae.html#scikits_odes.dae.dae.solve">[docs]</a>
<span class="k">def</span> <span class="nf">solve</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">tspan</span><span class="p">,</span> <span class="n">y0</span><span class="p">,</span> <span class="n">yp0</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">solve</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">tspan</span><span class="p">,</span> <span class="n">y0</span><span class="p">,</span> <span class="n">yp0</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Runs the solver.</span>

Expand Down Expand Up @@ -223,7 +223,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<div class="viewcode-block" id="dae.init_step">
<a class="viewcode-back" href="../../dae.html#scikits_odes.dae.dae.init_step">[docs]</a>
<span class="k">def</span> <span class="nf">init_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">y0</span><span class="p">,</span> <span class="n">yp0</span><span class="p">,</span> <span class="n">y_ic0_retn</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">yp_ic0_retn</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">init_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">y0</span><span class="p">,</span> <span class="n">yp0</span><span class="p">,</span> <span class="n">y_ic0_retn</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">yp_ic0_retn</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Initializes the solver and allocates memory. It is not needed to</span>
<span class="sd"> call this method if solve is used to compute the solution. In the case</span>
Expand Down Expand Up @@ -275,7 +275,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<div class="viewcode-block" id="dae.step">
<a class="viewcode-back" href="../../dae.html#scikits_odes.dae.dae.step">[docs]</a>
<span class="k">def</span> <span class="nf">step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t</span><span class="p">,</span> <span class="n">y_retn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">yp_retn</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t</span><span class="p">,</span> <span class="n">y_retn</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">yp_retn</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Method for calling successive next step of the IDA solver to allow</span>
<span class="sd"> more precise control over the IDA solver. The &#39;init_step&#39; method has to</span>
Expand Down Expand Up @@ -331,7 +331,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_integrator</span><span class="o">.</span><span class="n">step</span><span class="p">(</span><span class="n">t</span><span class="p">,</span> <span class="n">y_retn</span><span class="p">,</span> <span class="n">yp_retn</span><span class="p">)</span></div>


<span class="k">def</span> <span class="fm">__del__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="fm">__del__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Clean up what is needed</span>
<span class="sd"> &quot;&quot;&quot;</span>
Expand All @@ -343,11 +343,11 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>
<span class="c1"># DAE integrators</span>
<span class="c1">#------------------------------------------------------------------------------</span>

<span class="k">def</span> <span class="nf">find_dae_integrator</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">find_dae_integrator</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">dae</span><span class="o">.</span><span class="n">LOADED</span><span class="p">:</span>
<span class="c1">## ida</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">scikits_odes_sundials</span> <span class="kn">import</span> <span class="n">ida</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">scikits_odes_sundials</span><span class="w"> </span><span class="kn">import</span> <span class="n">ida</span>
<span class="n">DaeBase</span><span class="o">.</span><span class="n">integrator_classes</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ida</span><span class="o">.</span><span class="n">IDA</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">msg</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Could not load IDA solver&#39;</span><span class="p">,</span> <span class="n">msg</span><span class="p">)</span>
Expand All @@ -356,7 +356,7 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<span class="c1">## idas</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">scikits_odes_sundials</span> <span class="kn">import</span> <span class="n">idas</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">scikits_odes_sundials</span><span class="w"> </span><span class="kn">import</span> <span class="n">idas</span>
<span class="n">DaeBase</span><span class="o">.</span><span class="n">integrator_classes</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idas</span><span class="o">.</span><span class="n">IDAS</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">msg</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Could not load IDAS solver&#39;</span><span class="p">,</span> <span class="n">msg</span><span class="p">)</span>
Expand All @@ -365,13 +365,13 @@ <h1>Source code for scikits_odes.dae</h1><div class="highlight"><pre>

<span class="c1">## ddaspk</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">scikits_odes_daepack.ddaspkint</span> <span class="kn">import</span> <span class="n">ddaspk</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">scikits_odes_daepack.ddaspkint</span><span class="w"> </span><span class="kn">import</span> <span class="n">ddaspk</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()[</span><span class="mi">1</span><span class="p">])</span>

<span class="c1">## lsodi</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">scikits_odes_daepack.lsodiint</span> <span class="kn">import</span> <span class="n">lsodi</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">scikits_odes_daepack.lsodiint</span><span class="w"> </span><span class="kn">import</span> <span class="n">lsodi</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()[</span><span class="mi">1</span><span class="p">])</span>

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